. 2021 Oct 9;96:105108. doi: 10.1016/j.meegid.2021.105108

Table 1.

SS1 clusters and additional mutations. On the bottom left column, the absolute harbored SS1 genomes number by countries are shown. On the top, additional mutations, their genomic positions, the effect on protein translation and the affected codons are reported.

SS1 signature C⁸⁷⁸²T, T²⁸¹⁴⁴C
Additional mutations bps position		9477	14805	28657	28863	25979	26088	17747	17858	24694	18060	9445	17531	18756	25553	27801
ancestral/mutate		T/A	C/T	C/T	C/T	G/T	C/T	C/T	A/G	A/T	C/T	T/C	T/C	G/T	C/T	T/C
AA change		F > Y	/	/	S > L	G > V	/	P > L	Y > C	/	/	/	I > T	/	A > V	F > L
Gene		ORF1ab	ORF1ab	N	N	ORF3a	ORF3a	ORF1ab	ORF1ab	Spike	ORF1ab	ORF1ab	ORF1ab	ORF1ab	ORF3a	ORF7b
product		nsp4	/	/	Nucleocap.	orf3a	/	nsp13	nsp13	/	/	/	nsp13	/	orf3a	orf7b
Codon number		3071	/	/	197	196	/	5828	5865	/	/	/	5756	/	54	16
Country	SS1
AT	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	3
BE	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
FR	2	2	2	2	2	2	0	0	0	0	0	0	0	0	2	0
DE	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
GR	4	2	2	2	2	2	2	0	0	0	0	0	0	0	0	0
IS	15	0	0	0	0	0	0	15	15	15	14	13	10	10	0	0
LU	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
NL	9	4	4	4	4	4	1	0	0	0	0	0	0	0	0	0
PL	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
PT	6	4	4	4	4	4	2	0	0	0	0	0	0	0	0	0
ES	113	94	94	93	93	90	16	0	0	0	0	0	0	0	0	0
UK	7	2	2	2	2	2	0	0	0	0	0	0	0	0	0	0
Tot.	164	110	110	109	109	106	25	15	15	15	14	13	10	10	2	3