Table 2.
SS2 clusters and additional mutations. On the bottom left column, the absolute harbored SS2 genomes number by countries are shown. On the top, additional mutations, their genomic positions, the effect on protein translation and the affected codons are reported.
| SS2 signature G26144T | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Additional mutations bps position | 22661 | 14805 | 17247 | 1515 | 2668 | 2717 | 9223 | 9274 | 9438 | 13225 | 13226 | 17376 | 23952 | |
| ancestal/mutate | G /T | C /T | T/C | A/G | C/T | G/A | C/T | A/G | C/T | C/G | T/C | A/G | T/G | |
| AA change | V > F | / | / | H > R | / | G > S | / | / | T > I | / | F > L | / | F > C | |
| Gene | S | ORF1ab | ORF1ab | ORF1ab | ORF1ab | ORF1ab | ORF1ab | ORF1ab | ORF1ab | ORF1ab | ORF1ab | ORF1ab | S | |
| Product | Spike | / | / | nsp2 | / | nsp2 | / | / | nsp4 | / | nsp10 | / | Spike | |
| Codon number | 367 | / | / | 417 | / | 818 | / | / | 3058 | / | 4321 | / | 797 | |
| Country | SS2 | |||||||||||||
| BE | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| FR | 5 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| IS | 1 | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| SE | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 1 |
| Tot | 8 | 5 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | |