REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Integrin β1 (D2E5) | Cell Signaling Technology | Cat#9699; RRID:AB_11178800 |
Integrin β1 (12G10) | Abcam | Catab30394 |
Integrin β1 (CD29)-BV510 | BD Biosciences | Cat#747747; RRID:AB_2868388 |
Integrin α1 (CD49a) Alexa 647 | Biolegend | Cat328310; RRID:AB_2129242 |
Integrin α2 | Abcam | Catab181548; RRID:AB_2847852 |
Integrin α2 (CD49b)-FITC | BD Biosciences | Cat555498; RRID:AB_395888 |
Integrin α2 (CD49b)-Alexa 647 | BD Biosciences | Cat564314; RRID:AB_2738739 |
E-Cadherin (24E10) | Cell Signaling Technology | Cat3195; RRID:AB_2291471 |
K48-linkage Specific Polyubiquitin (D9D5) | Cell Signaling Technology | Cat4289; RRID:AB_10557239 |
HA-Tag | Cell Signaling Technology | Cat3724; RRID:AB_1549585 |
AnnexinV-FITC | Biolegend | 640906 |
Tubulin | Cell Signaling Technology | Cat2148; RRID:AB_2288042 |
GAPDH | Santa Cruz | Catsc47724; RRID:AB_627678 |
PARP | Cell Signaling Technology | Cat9542; RRID:AB_2160739 |
Cleaved PARP | Cell Signaling Technology | Cat9541; RRID:AB_331426 |
ATF-6 | Cell Signaling Technology | Cat65880; RRID:AB_2799696 |
IRE1α | Cell Signaling Technology | Cat3294; RRID:AB_823545 |
Actin | Sigma-Aldrich | CatA5441; RRID:AB_476744 |
SignalStain®Boost IHC Detection Reagent (HRP, Mouse) | Cell Signaling Technology | Cat8125; RRID:AB_10547893 |
SignalStain®Boost IHC Detection Reagent (HRP, Rabbit) | Cell Signaling Technology | Cat8114; RRID:AB_10544930 |
Anti-mouse IgG, HRP-linked Antibody | Cell Signaling Technology | Cat7076; RRID:AB_330924 |
Anti-rabbit IgG, HRP-linked Antibody | Cell Signaling Technology | Cat7074; RRID:AB_2099233 |
Sambucus Nigra Lectin (Agarose bound) | Vector Laboratories | AL-1303-2 |
Chemicals, peptides, and recombinant proteins | ||
Collagen type I (from Human placenta) | Sigma-Aldrich | C7774 |
Collagen type III (From human placenta) | Advanced BioMatrix | 5019 |
Collagen type IV (From Human Cell) | Sigma-Aldrich | C7521 |
Fibronectin from Human Plasma | Millipore | FC010 |
Laminin (From EHS murine sarcoma) | Sigma-Aldrich | L2020 |
DAPI | BD Biosciences | 564907 |
FITC Annexin V Apoptosis Detection Kit I | BD Biosciences | 556547 |
Pierce™ BCA Protein Assay Kit | ThermoFisher Scientific | 23225 |
Diaminobenzidine substrate kit (DAB) | ThermoFisher Scientific | 34002 |
ProLong® Gold antifade reagent | Cell Signaling Technology | 9071 |
Radioimmunoprecipitation assay buffer (RIPA) | Cell Signaling Technology | 9806 |
Thiazolyl Blue Tetrazolium Bromide (MTT) | Sigma-Aldrich | M2128 |
Agarose, low gelling temperature | Sigma-Aldrich | A9414 |
Fetal Bovine Serum | Sigma-Aldrich | F7524 |
Bovine serum albumin | Sigma-Aldrich | A9418 |
Proteinase Inhibitor Cocktails | Sigma-Aldrich | P8340 |
Cell-dissociation solution non-enzymatic | Sigma-Aldrich | C5914 |
MG132 | Sigma-Aldrich | M8699 |
Cycloheximide | Sigma-Aldrich | C4859 |
Tunicamycin | Sigma-Aldrich | T7765 |
pGEM®-T Easy Vector System | Promega | A1360 |
Wizard® SV Gel and PCR Clean-Up System | Promega | A9281 |
Pfu DNA Polymerase | Promega | M7741 |
Sequencing-grade modified trypsin | Promega | V5111 |
jetPEI DNA transfection reagent | Polyplus-transfection | 101-10N |
Trans IT-X2 transfection reagent | Mirus | MIR6004 |
Q5 Site-Directed Mutagenesis Kit | New England Biolabs | E0554S |
PNGase F | New England Biolabs | P0708L |
Experimental models: Cell lines | ||
IGROV1 | ATCC | RRID:CVCL_1304 |
SK-OV-3 | ATCC | RRID:CVCL_0532 |
OVCAR3 | ATCC | RRID:CVCL_0465 |
OVCAR4 | Oncotest GmbH | RRID:CVCL_1627 |
OVCAR5 | Oncotest GmbH | RRID:CVCL_1628 |
OVCAR8 | Oncotest GmbH | RRID:CVCL_1629 |
CAOV3 | ATCC | RRID:CVCL_0201 |
BG1 | Oncotest GmbH | RRID:CVCL_6571 |
SKOV3.ip1 | RRID:CVCL_0C84 | |
Oligonucleotides | ||
ITGA2 N105Q For AAGCATTCCAcaaGTTACTGAGATG | This paper | NA |
ITGA2 N105Q Rev GTTGAAGTTTGCAAATTTAGTTTTTC | This paper | NA |
ITGA2 N112Q For GATGAAAACCcaaATGAGCCTCG | This paper | NA |
ITGA2 N112Q Rev TCAGTAACATTTGGAATGC |
This paper | NA |
ITGA2 N343Q For ATACTTTTTCcaaGTGTCTGATGAAGC | This paper | NA |
ITGA2 N343Q Rev CTTTCTGTTGGAATACTAGC |
This paper | NA |
ITGA2 N432Q For GCAGGACAGAcaaCACAGTTCATATTTAG | This paper | NA |
ITGA2 N432Q Rev AGAATTTGGTCAAAGGCTTG |
This paper | NA |
ITGA2 N460Q For TCCTCGGGCAcaaTATACCGGCC | This paper | NA |
ITGA2 N460Q Rev GCACCAGCAACAAAGTGAG |
This paper | NA |
ITGA2 N475Q For TGAGAATGGCcagATCACGGTTATTC | This paper | NA |
ITGA2 N475Q Rev TTCACACTATATAGCACTATCTGG |
This paper | NA |
ITGA2 N699Q For CATTGTATATcaaATCACACTTGATGC | This paper | NA |
ITGA2 N699Q Rev GCCACTTGATTGTTTTGC |
This paper | NA |
ITGA2 N1057Q For TTCCTGTAGTcaaGTTACCTGCTG | This paper | NA |
ITGA2 N1057Q Rev GCAGTTCTGCAGTTCAATTC |
This paper | NA |
ITGA2 N1074Q For ATACTTTGTTcaaGTGACTACCAGAATTTG | This paper | NA |
ITGa2 N1074Q Rev TCTCCTTTCATGTGAACG |
This paper | NA |
ITGA2 N1081Q For CAGAATTTGGcaaGGGACTTTCG | This paper | NA |
ITGA2 N1081Q Rev GTAGTCACTTGAACAAAGTATTC |
This paper | NA |
ITGA2 614F Sequencing primer GCCCCACAAAGACACAGGT | This paper | NA |
ITGA2 1990F Sequencing primer ACCGATGTGTCTATTGGTGCC |
This paper | NA |
ITGA2 2003R Sequencing Primer TGGTCAACAAGAATGCTCAGA | This paper | NA |
ATF-6 For QPCR TTGACATTTTTGGTCTTGTGG | Balakrishnan et al., 2013 | NA |
ATF-6 Rev GCAGAAGGGGAGACACATTT |
Balakrishnan et al., 2013 | NA |
PERK For TCATCCAGCCTTAGCAAACC | Balakrishnan et al., 2013 | NA |
PERK Rev ATGCTTTCACGGTCTTGGTC |
Balakrishnan et al., 2013 | NA |
IRE1a For CTCTGTCCGTACCGCCC | Balakrishnan et al., 2013 | NA |
IRE1a Rev GAAGCGTCACTGTGCTGGT |
Balakrishnan et al., 2013 | NA |
Recombinant DNA | ||
pUltra | Addgene | 24129 |
pUltra-Chili | Addgene | 48687 |
pCMVR8.74 | Addgene | 22036 |
pMD2.G | Addgene | 12259 |
mCherry-Integrin-Alpha2-N-18 | Addgene | 55063 |
pUltra-Chili-ITGA2-HA | Huang et al., 2020 | NA |
pUltra-Chili-ITGA2-HA (KOR) | Huang et al., 2020 | NA |
pUltra-Chili-ITGA2-N3NQ-HA | This paper | NA |
pUltra-Chili-ITGA2-I4NQ-HA | This paper | NA |
pUltra-Chili-ITGA2-C3NQ-HA | This paper | NA |
pUltra-Chili-ITGA2-10NQ-HA | This paper | NA |
pCMV3-ST6GAL1-HA | Sino Biological Inc | HG11590-CY |
pUltra-ST6GAL1 | This paper | NA |
Software and algorithms | ||
R studio 4.0.3 | R Core Team, 2017 | https://www.R-project.org/ |
GraphPad Prism 9 | Pad Software, Inc. | https://www.graphpad.com/ |
ImageJ | NIH | https://imagej.nih.gov/ij/ |
FlowJo v10 | Becton Dickinson | https://www.flowjo.com/ |
Byonic 2.16 | Protein Metrics | https://proteinmetrics.com/ |
Image Lab 6.0.1 | Bio-Rad | https://www.bio-rad.com/ |
Skyline 20.1 | MacCoss Lab | https://skyline.ms/ |
SafeQuant v2.3.4 | Ahrne et al., 2016 | https://github.com/eahrne/SafeQuant/) |
ReactomePA | Yu and He, 2016 | NA |
Progenesis QI 2.0 | Waters | https://www.nonlinear.com/ |
OMERO v5.6 | OME project | https://www.openmicroscopy.org/omero |
Adobe illustrator 2021 | Adobe | https://www.adobe.com/ch_de/?mv=search&sdid=88X75SKX |