Table 1.
Enzymatic stability of linear and circular single-stranded oligonucleotides
Oligonucleotide | Sequences (5′-3′)a | 3′-Exonuclease half-lifeb | Intact after 24 h (%) | 5′-Exonuclease half-lifec | Intact after 24 h (%) |
---|---|---|---|---|---|
ON-1 | (dT)19•dT | 1 | 10.0 | ||
ON-2 | dT•(dT)19 | 1 | 6.5 | ||
ON-3 | Q(dT)23Y | 0.7 | 2.7 | 8.2 | 13.3 |
ON-4 | Z(dT)23 | 1.2 | 14.8 | 26.8 | 52.5 |
ON-5 (linear) | QaaAaCaGuGuUCUuGcUcUaUaAY | 12.8 | 76.1 | 14.1 | 83.8 |
ON-6 (cyclic) | ZaaAaCaGuGuUCUuGcUcUaUaA | 14.5 | 79.1 | 423.0 | 100.0 |
aChemistry modifications legend: •, terminal PS linkage; dT, 2′-deoxythimidine; lower case nucleotides, 2′-OMe; upper case nucleotides in italics, 2′-F; Q, 6-azidohexyl-phosphate. For structures of Y and Z, see Scheme 1. Z denotes a cyclic oligonucleotide.
bHalf-life value determined in hours and reported relative to that of the (dT)19•dT control.
cHalf-life value was determined in hours and reported relative to that of the dT•(dT)19 control. First-order decay kinetics were assumed in calculation of half-lives. Data are representative of two independent experiments with similar results.