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Most variants are common to “BP2019”, “BP2015” and “3mask”. Venn diagrams of the variants in “BP2019”, “BP2015” and “3mask” before VQSR (A and B) and after VQSR (C and D). The diagrams are not to scale. The percentages in parenthesis represent the percentage of all variants combined which are in the intersection. A All variant sites, before VQSR. B Biallelic SNPs, before VQSR. C All variant sites, after VQSR. D Bbiallelic SNPs, after VQSR
