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. 2021 Oct 10;22:489. doi: 10.1186/s12859-021-04408-w

Table 2.

Summary of genomic visualization tools

Tools Programming language API plot CLI plot Online access
CoolBox Python
pyGenomeTracks Python
gcMapExplorer Python
HiCPlotter Python
HiGlass Python, HTML, CSS, JS
YueLab Browser HTML, CSS, JS
WashU Browser HTML, CSS, JS
TADkit HTML, CSS, JS
JuiceBox.js HTML, CSS, JS
JuiceBox Java
GUI Input Installation Customization
Web and Jupyter Raw data Bioconda or PyPI Python knowledge, very easy
Raw data PyPI Python knowledge, easy
Local Preprocessed data PyPI Python knowledge, easy
Preprocessed data Manually install
Web and Jupyter Preprocessed data, via network Docker Web knowledge
Web Via network
Web Via network
Web Preprocessed data, via network Manually install
Web Via network
Local Raw data Download