Figure 2.
Production of DIII blocking peptides and assessment of the presence of disulfide bond. (A) Amplicons encoding tagged peptides resolved on the agarose gel; (B) Purified tagged peptides on LDS-PAGE. (C) Molecular mass of the representative cyclic peptide (CP2) confirmed by MALDI-TOF MS; (D) Molecular mass of the representative linear peptide (LP3) confirmed by MALDI-TOF MS. Predicted masses of tagged peptides (~ 7 kDa) corresponded to observed masses in MALDI-TOF MS (C and D), however, tagged peptides had slower migration in LDS-PAGE (B). In (C and D): I – tagged peptide; II – the tag (6xHis tag – 28 aa tag – GGGGS linker) after enterokinase digestion; III – purified peptide after removal of the tag. (E) The presence of disulfide bonds in cyclic peptides was confirmed. Any free thiols present in the peptides were blocked with N-ethylmaleimid (NEM). Peptides were then either reduced (R) or maintained in oxidized form (O). Both R and O forms were incubated with thiol-reactive IRDye 800CW Maleimide and then separated on non-reducing LDS-PAGE. In the peptide, if thiols are occupied with the disulfide bond, they remain unblocked and get reduced with TCEP. Free thiols in reduced peptides are then labeled giving a green signal. In the oxidized form, no free thiols are available, thus no labeling occurs (no green signal).