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Confusion matrices for the XGBoost binary classifier predictions (TCGA FFPE dataset, according to WES-TMB standards calculated with matched normal WES profiles).
| No WES variant | WES variant | ||
|---|---|---|---|
| A. Training dataset | 457,276 (TN) | 1,050 (FN) | Predicted noise |
| 60 (FP) | 571 (TP) | Predicted signal | |
| B. Testing dataset | 373,731 (TN) | 1,218 (FN) | Predicted noise |
| 101 (FP) | 98 (TP) | Predicted signal |
