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. 2021 Sep 30;22(19):10640. doi: 10.3390/ijms221910640

Table 1.

Data collection and refinement statistics for the crystal structure of Trop2 ectodomain.

PDB ID 7PEE
Data collection
X-ray source and beamline Elettra Synchrotron, XRD2 (11.2C)
Wavelength (Å) 0.9789
Space group P4322
Cell dimensions
a, b, c (Å) 145.08, 145.08, 217.77
α, β, γ (°) 90, 90, 90
Data statistics
Resolution range (Å) a 48.36–2.81 (2.91–2.81)
Total no. of reflections a 376,492 (36,911)
No. of unique reflections a 57,144 (5604)
Mean I/σ(I) a 15.27 (1.73)
Rmerge (%) a,b 11.88 (127.2)
CC1/2 a,b 0.997 (0.692)
Completeness (%) a 99.59 (99.48)
Redundancy a 6.6 (6.6)
Number of atoms
Total 7620
Protein/Water/Ligands 7476/30/114
Refinement statistics
Rwork/Rfree (%) c 23.94 (26.30)
Root-mean-square deviations
Bond lengths (Å) 0.007
Bond angles (°) 1.07
Ramachandran plot
Favored/Allowed/Outliers (%) d 95.75/4.25/0.00
Rotamer outliers (%) d 1.71
B-factor
Average 75.80
Protein/Ligands/Solvent 75.12/125.23/57.60

a Values in parentheses refer to the highest resolution shell. b Rmerge=hkliIihklIhkl / hkliIihkl, where I(hkl) is the mean insensity of a set of equivalent reflections. c  Rwork=hkl|FobsFcalc| / hklFobs, where Fobs and Fcalc are observed and calculated structure factors, respectively. Rfree was calculated in the same way as Rwork, however only a test set consisting of 5% of data excluded from refinement calculation was used. d Values were obtained using MolProbity [34].