TABLE 2.

Ten most abundant Armillaria transcripts in sporocarps and carpophoroids^a

Gene	Annotation	Cond.	C (TMM)	S (TMM)	logFC	q value
ARM_DN1755_c2_g1	Cell wall galactomannoprotein	S	0	36,479	13.5	4.0 × 10−182
ARM_DN3840_c0_g1	Serine carboxypeptidase	S	12	29,472	6.7	7.9 × 10−100
ARM_DN22943_c1_g1	Rab geranylgeranyltransferase	S	21	18,649	5.1	3.8 × 10−89
ARM_DN1737_c0_g1	LysM-domain-containing protein	S	0	14,557	15.9	3.0 × 10−159
ARM_DN1699_c3_g1	Hypothetical protein	S	9	12,848	5.8	1.6 × 10−94
ARM_DN1314_c0_g1	Chondroitin AC/alginate lyase	S	102	11,436	2.2	3.7 × 10−25
ARM_DN20980_c0_g1	Glycopeptide	S	0	10,449	15.4	3.4 × 10−139
ARM_DN8135_c0_g1	Rasp f 7 allergen	S	0	9,014	11.5	1.8 × 10−58
ARM_DN4971_c0_g2	Aldehyde dehydrogenase	S	103	8,688	NS
ARM_DN1205_c0_g1	Hypothetical protein	S/C	9,049	8,348	−4.8	2.1 × 10−74
ARM_DN5170_c0_g1	Hypothetical protein	C	2,086	377	−7.1	6.9 × 10−150
ARM_DN23207_c0_g2	Senescence associated	C	1,711	2,482	−4.1	6.6 × 10−61
ARM_DN996_c0_g1	Senescence associated	C	1,423	1,090	−5.0	3.0 × 10−73
ARM_DN409_c1_g1	Elongation factor 1-alpha	C	769	1,154	−4.1	4.0 × 10−155
ARM_DN1893_c0_g1	Hypothetical protein	C	722	58	−8.3	5.3 × 10−109
ARM_DN693_c0_g1	Hypothetical protein	C	520	840	−3.9	1.1 × 10−48
ARM_DN1222_c0_g1	CYS3-cystathionine gamma-lyase	C	485	717	−4.1	5.5 × 10−27
ARM_DN1146_c0_g4	Heat shock protein 70	C	431	2,361	−2.2	1.7 × 10−54
ARM_DN3800_c0_g1	ATP synthase F1	C	300	4,686	NS

^aCond., condition under which each gene was most abundant, referring to either the carpophoroids (C) or sporocarps (S). NS, not significantly differentially upregulated. Negative logFC values are significantly differentially upregulated in the carpophoroid, whereas positive values are significantly differentially upregulated in the sporocarp. Transcripts discussed in the text were an isocitrate lyase (ARM_DN1_c7_g1), two putative senescence-associated proteins (ARM_DN23207_c0_g2 and ARM_DN996_c0_g1), and a heat shock protein (ARM_DN1146_c0_g4).