Table 2.
Genomic relationship of strains listed under Pseudomonas cichorii in NCBI compared to strain Pc19-1T and P. cichorii ATCC10857T
ANIb and dDDH values were calculated using JSpeciesWS version 1.2.1 [17] and the Genome-to-Genome Distance Calculator 2.1 (formula 2) [18], respectively. ANIb values larger than 95 % are in bold. dDDH values larger than 70 % are in bold.
|
ANIb (%) |
dDDH (%) |
|||||
|---|---|---|---|---|---|---|
|
Strain |
P. capsici 19-1T |
P. cichorii ATCC10857T |
P. capsici 19-1T |
P. cichorii ATCC10857T |
Species status |
Reference |
|
MAFF302698 |
98.5 |
91.3 |
88.3 |
45.2 |
P. capsici |
[30] |
|
481 |
98.5 |
91.3 |
87.9 |
45 |
P. capsici |
N/A |
|
Ku1409-10-1 |
98.4 |
91.3 |
88.1 |
45.2 |
P. capsici |
[30] |
|
NB15027 |
98.4 |
91.3 |
87.9 |
45.2 |
P. capsici |
[30] |
|
482 |
98.4 |
91.3 |
87.8 |
45.1 |
P. capsici |
N/A |
|
136 |
98.4 |
91.3 |
87.8 |
45.3 |
P. capsici |
N/A |
|
ICMP1649 |
98.4 |
91.3 |
88.4 |
45.3 |
P. capsici |
N/A |
|
474 |
98.4 |
91.3 |
87.8 |
45.3 |
P. capsici |
N/A |
|
S-2-2-1 |
98.4 |
91.3 |
87.7 |
45.2 |
P. capsici |
[30] |
|
473 |
97.2 |
91.2 |
77.1 |
45.3 |
P. capsici |
N/A |
|
Pcic4 |
92.1 |
94.0 |
48.4 |
57.6 |
Potential new species |
N/A |
|
Ku1408-5-5 |
92.1 |
94.5 |
48.2 |
59.1 |
Potential new species |
[30] |
|
REF |
91.4 |
99.9 |
45.3 |
99.8 |
N/A |
|
|
JBC1 |
91.4 |
99.9 |
45.2 |
99.8 |
[31] |
|
|
MAFF301184 |
91.4 |
99.0 |
45.1 |
92.2 |
[30] |
|
|
ICMP6917 |
91.4 |
99.3 |
45.1 |
94.4 |
N/A |
|
|
MAFF302096 |
89.0 |
91.4 |
38.1 |
45.2 |
Potential new species |
[30] |
|
MAFF301764 |
88.9 |
91.0 |
37.8 |
43.9 |
Potential new species |
[30] |
|
ICMP3353 |
86.8 |
86.6 |
32.7 |
32.6 |
Potential new species |
N/A |