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. 2021 Apr 10;70(6):1200–1212. doi: 10.1093/sysbio/syab027

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© The Author(s) 2021. Published by Oxford University Press, on behalf of the Society of Systematic Biologists.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 1. — Six-state recoding approaches produce more incorrect trees under various levels of compositional heterogeneity. a) Trees used for simulations. The value in the name of the tree (e.g., 0.008 in Tree 0.008) denotes the length in substitutions per site of the stem branches of clade-A and clade-B, and stem branches of clade-C and clade-D (highlighted in orange and with arrows). b) Percentage of 1000 trees that did not reconstruct a monophyletic group of taxa from clade-A and clade-B and monophyletic group of taxa from clade-C and clade-D.