Table 2.
Genera uniquely detected by culturomics, metagenomics, and overlap
| Phylum | Genus | # samples cultured only | # samples metagenomic only | # overlaps | # total samples |
|---|---|---|---|---|---|
| Actinobacteria | Corynebacterium | 5 | 2 | 12 | 19 |
| Firmicutes | Streptococcus | 1 | 7 | 11 | 19 |
| Firmicutes | Veillonella | 0 | 7 | 10 | 17 |
| Proteobacteria | Neisseria | 0 | 4 | 10 | 14 |
| Actinobacteria | Actinomyces | 2 | 3 | 10 | 15 |
| Actinobacteria | Rothia | 0 | 6 | 9 | 15 |
| Firmicutes | Staphylococcus | 8 | 0 | 9 | 17 |
| Actinobacteria | Cutibacterium | 1 | 3 | 8 | 12 |
| Proteobacteria | Haemophilus | 0 | 9 | 7 | 16 |
| Firmicutes | Gemella | 0 | 7 | 6 | 13 |
| Firmicutes | Lachnoanaerobaculum | 0 | 5 | 5 | 10 |
| Bacteroidetes | Bacteroides | 0 | 1 | 5 | 6 |
| Bacteroidetes | Parabacteroides | 0 | 0 | 5 | 5 |
| Fusobacteria | Fusobacterium | 1 | 3 | 4 | 8 |
| Firmicutes | Lactobacillus | 2 | 2 | 3 | 7 |
| Actinobacteria | Bifidobacterium | 0 | 1 | 3 | 4 |
| Actinobacteria | Collinsella | 0 | 0 | 3 | 3 |
| Bacteroidetes | Prevotella | 0 | 12 | 2 | 14 |
| Proteobacteria | Aggregatibacter | 0 | 6 | 2 | 8 |
| Firmicutes | Clostridium | 3 | 4 | 2 | 9 |
| Actinobacteria | Micrococcus | 2 | 2 | 2 | 6 |
| Proteobacteria | Escherichia | 3 | 1 | 2 | 6 |
| Actinobacteria | Brevibacterium | 1 | 1 | 2 | 4 |
| Firmicutes | Flavonifractor | 2 | 0 | 2 | 4 |
| Firmicutes | Granulicatella | 0 | 13 | 1 | 14 |
| Actinobacteria | Atopobium | 1 | 5 | 1 | 7 |
| Actinobacteria | Kocuria | 1 | 5 | 1 | 7 |
| Firmicutes | Eubacterium | 1 | 3 | 1 | 5 |
| Proteobacteria | Acinetobacter | 0 | 3 | 1 | 4 |
| Bacteroidetes | Alistipes | 0 | 3 | 1 | 4 |
| Firmicutes | Blautia | 1 | 2 | 1 | 4 |
| Bacteroidetes | Odoribacter | 1 | 2 | 1 | 4 |
| Actinobacteria | Kytococcus | 1 | 1 | 1 | 3 |
| Firmicutes | Bacillus | 5 | 0 | 1 | 6 |
| Actinobacteria | Dermabacter | 2 | 0 | 1 | 3 |
| Bacteroidetes | Capnocytophaga | 0 | 9 | 0 | 9 |
| Proteobacteria | Actinobacillus | 0 | 8 | 0 | 8 |
| Fusobacteria | Leptotrichia | 0 | 7 | 0 | 7 |
| Bacteroidetes | Porphyromonas | 0 | 7 | 0 | 7 |
| Bacteroidetes | Alloprevotella | 0 | 7 | 0 | 7 |
| Firmicutes | Oribacterium | 0 | 6 | 0 | 6 |
| Firmicutes | Stomatobaculum | 0 | 6 | 0 | 6 |
| Firmicutes | Subdoligranulum | 0 | 6 | 0 | 6 |
| Proteobacteria | Campylobacter | 2 | 5 | 0 | 7 |
| Firmicutes | Peptostreptococcus | 2 | 5 | 0 | 7 |
| Firmicutes | Megasphaera | 0 | 5 | 0 | 5 |
| Firmicutes | Solobacterium | 0 | 5 | 0 | 5 |
| Firmicutes | Oscillibacter | 0 | 5 | 0 | 5 |
| Proteobacteria | Enhydrobacter | 0 | 4 | 0 | 4 |
| Firmicutes | Abiotrophia | 0 | 4 | 0 | 4 |
| Proteobacteria | Kingella | 0 | 4 | 0 | 4 |
| Firmicutes | Dorea | 0 | 4 | 0 | 4 |
| Proteobacteria | Bilophila | 0 | 4 | 0 | 4 |
| Firmicutes | Faecalibacterium | 0 | 4 | 0 | 4 |
| Firmicutes | Finegoldia | 2 | 3 | 0 | 5 |
| Firmicutes | Selenomonas | 0 | 3 | 0 | 3 |
| Saccharibacteria | Saccharibacteria | 0 | 3 | 0 | 3 |
| Proteobacteria | Parasutterella | 0 | 3 | 0 | 3 |
| Firmicutes | Roseburia | 0 | 3 | 0 | 3 |
| Firmicutes | Anaerococcus | 3 | 2 | 0 | 5 |
| Firmicutes | Ruminococcus | 2 | 2 | 0 | 4 |
| Firmicutes | Parvimonas | 1 | 2 | 0 | 3 |
| Actinobacteria | Eggerthella | 3 | 1 | 0 | 4 |
| Firmicutes | Pediococcus | 2 | 1 | 0 | 3 |
| Firmicutes | Enterococcus | 6 | 0 | 0 | 6 |
| Proteobacteria | Citrobacter | 3 | 0 | 0 | 3 |
| Actinobacteria | Dietzia | 3 | 0 | 0 | 3 |
| Firmicutes | Lysinibacillus | 3 | 0 | 0 | 3 |