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(A) Unrooted of maximum likelihood whole pHCM2 phylogeny including S. Paratyphi A isolates from this study and S. Typhi, S. Paratyphi B variant Java from previous studies in Bangladesh (B) Maximum likelihood of pHCM2 phylogeny including only S. Paratyphi A and Typhi isolates. The coloured heatmap shows species and year of collection for each isolate.
