REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
PerCP-conjugated anti-HA tag antibody | Abcam | Cat# ab1117491 |
APC-conjugated anti-human IgG Fc | Biolegend | Cat# 410712 RRID:AB_2565790 |
anti-HA-tag antibody | EasyBio | Cat# BE2007 |
Goat anti-mouse IgG(H+L)-HRP | Gene-Protein Link | Cat# P03S01M |
HRP-conjugated goat anti-human IgG(H+L) | Proteintech | Cat# SA00001-17 RRID:AB_2890979 |
anti-His-tag mAB-HRP-DirecT A | MBL | Cat# D291-7; RRID: AB_10694870 |
Bacterial and virus strains | ||
Escherichia coli (E.coli) strain T1 | TransGen | Cat# CD501-2 |
Escherichia coli (E.coli) strain DH10Bac | BioMed | BC112 |
Escherichia coli (E. coli) strain BL21 (DE3) | Novagen | Cat# 69450 |
Chemicals, peptides, and recombinant proteins | ||
BS3 (bis (sulfosuccinimidyl) suberate) | Thermo | Cat# 21580 |
EndoH | This paper | N/A |
PNGase | This paper | N/A |
TROP-2-ECD-293T | This paper | N/A |
TROP-2-ECD-insect | This paper | N/A |
sacituzumab | This paper | N/A |
Critical commercial assays | ||
Crystallization kits | Hampton Research and Molecular Dimensions and Wizard Classic |
http://www.hamptonresearch.com; https://www.moleculardimensions.com/;https://rigakureagents.com/ |
HisTrap excel 5mL column | GE Healthcare | Cat# 17371205 |
RESOURCETM S 6 mL column | GE Healthcare | Cat# 17118001 |
Hiload Superdex® 200 16/600 pg column | GE Healthcare | Cat# 2898933 |
Superdex® 200 Increase 10/300 GL column | GE Healthcare | Cat# 28990944 |
HiTrap Protein A HP | GE Healthcare | Cat# 17040303 |
Deposited data | ||
TROP-2-ECD-293T | This paper | PDB: 7E5M |
TROP-2-ECD-insect | This paper | PDB: 7E5N |
Experimental models: cell lines | ||
HEK-293T cells | ATCC | CRL-3216; RRID:CVCL_0063 |
High Five cells | Invitrogen | B85502 |
Sf9 cells | Invitrogen | B82501 |
Recombinant DNA | ||
pFastBac1-TROP-2-ECD-insect | This paper | N/A |
pCAGGS | MiaoLingPlasmid | Cat# P0165 |
pCAGGS-TROP-2-ECD-293T | This paper | N/A |
pCAGGS-TROP-2-N33Q | This paper | N/A |
pCAGGS-TROP-2-N120Q | This paper | N/A |
pCAGGS-TROP-2-N168Q | This paper | N/A |
pCAGGS-TROP-2-N208Q | This paper | N/A |
pCAGGS-TROP-2-WT | This paper | N/A |
pCAGGS-mTROP-2 | This paper | N/A |
pCAGGS-TROP-2-mCRD | This paper | N/A |
pCAGGS-TROP-2-mTY | This paper | N/A |
pCAGGS-TROP-2-mCPD | This paper | N/A |
pCAGGS-TROP-2-mRCPD | This paper | N/A |
pCAGGS-TROP-2-mACPD | This paper | N/A |
pCAGGS- sacituzumab-H-chain | This paper | N/A |
pCAGGS- sacituzumab-L-chain | This paper | N/A |
pET28a-PNGase | This paper | N/A |
pET28a-ENdoH | This paper | N/A |
Software and algorithms | ||
PyMOL software | Molecular Graphics System, Version 1.8 Schrö dinger |
https://pymol.org/2/ RRID:SCR_000305 |
FlowJo 7.6.1 | FLOWJO | https://www.flowjo.com/solutions/flowjo/downloads |
Phenix | Adams et al., 2010 |
http://www2.mrclmb.cam.ac.uk/Personal/pemsley/coot/; RRID:SCR_014222 |
Coot | Emsley and Cowtan, 2004 |
http://www.phenixonline.org/; RRID:SCR_014224 |
CCP4 | Collaborative Computational Project |
https://www.ccp4.ac.uk/ RRID:SCR_007255 |
MolProbity | Chen et al., 2010 | N/A |
Origin | OriginLab |
https://www.originlab.com/ RRID:SCR_002815 |