Skip to main content
. 2021 Sep 25;24(10):103173. doi: 10.1016/j.isci.2021.103173
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Rabbit polyclonal anti-TYK2 Cell signaling Technology Cat# 9312S; RRID: AB_2256719
Rabbit monoclonal anti-phospho (Y1054/1055)-TYK2 (D7T8A) Cell signaling Technology Cat# 68790S; RRID: AB_2799752
Rabbit monoclonal anti-phospho (Y1034/1035)-JAK1 (D7N4Z) Cell signaling Technology Cat# 74129S; RRID: AB_2799851
Rabbit polyclonal anti-phospho (Y1007/1008)-JAK2 Cell signaling Technology Cat# 3771S; RRID: AB_330403
Rabbit monoclonal anti-phospho (Y701)-STAT1 (58D6) Cell signaling Technology Cat# 9167S; RRID: AB_561284
Rabbit polyclonal anti-phospho (T202/Y204)-p44/42 MAPK (ERK1/2) Cell signaling Technology Cat# 9101S; RRID: AB_331646
Rabbit polyclonal anti-ETS-1 (C-20) Santa Cruz Biotechnology Cat# sc-350; RRID: AB_2100688
Rabbit polyclonal anti-FLI-1 (C-19) Santa Cruz Biotechnology Cat# sc-356; RRID: AB_2106116
Mouse monoclonal anti-ISG15 (F-9) Santa Cruz Biotechnology Cat# sc-166755; RRID: AB_2126308
Mouse monoclonal anti-SLFN11 (D-2) Santa Cruz Biotechnology Cat# sc-515071
Rabbit polyclonal anti-GAPDH GeneTex Cat# GTX100118; RRID: AB_1080976
ECL anti-mouse IgG, horseradish peroxidase linked whole antibody (from sheep) GE Healthcare cat# NA931; RRID: AB_772210
ECL anti-rabbit IgG, horseradish peroxidase linked whole antibody (from donkey) GE Healthcare cat# NA934; RRID: AB_772206

Chemicals, peptides, and recombinant proteins

Recombinant human interferon-gamma Thermo Fisher Scientific Cat# PHC4031
Human interferon-alpha a protein (alpha 2a) PBL assay science Cat# 11101-2
Cerdulatinib MedChemExpress Cat# HY-15999
Ruxolitinib MedChemExpress Cat# HY-50856
Tofacitinib MedChemExpress Cat# HY-40354
MK-2206 dihydrochloride MedChemExpress Cat# HY-10358
SCH772984 MedChemExpress Cat# HY-50846
TK216 Shelleckchem Cat# S9718
LY294002 (InSolution) Sigma-Aldrich Cat# 440204
Retinoic acid Sigma-Aldrich Cat# R2625

Critical commercial assays

TRIzol reagent Invitrogen Cat# 15596026
PureLink RNA Mini Kit Invitrogen Cat# 12183025
SuperScript II Reverse Transcriptase Kit Invitrogen Cat# 18064022
FastStart Universal SYBR Green Master (Rox) Sigma-Aldrich Cat# 4913850001
protease inhibitor cocktail (100x) Cell signaling Technology Cat# 5871S
Pierce phosphatase inhibitor mini tablets Thermo Fisher Scientific Cat# A32957
Novex tris-glycine SDS sample buffer Invitrogen Cat# LC2676
Tris/glycine/SDS buffer (10x) BioRad Cat# 1610732
Novex tris-glycine transfer buffer (25x) Invitrogen Cat# LC3675
Blotting-Grade Blocker BioRad Cat# 1706404
Immun-Blot PVDF membranes BioRad Cat# 1620177

Experimental models: Cell lines

Human: prostate cancer DU145 cells Developmental Therapeutics Program (NCI/NIH) N/A
Human: colon cancer HCT116 cells Developmental Therapeutics Program (NCI/NIH) N/A
Human: leukemia CCRF-CEM cells Developmental Therapeutics Program (NCI/NIH) N/A
Human: leukemia MOLT4 cells Developmental Therapeutics Program (NCI/NIH) N/A
Human: leukemia K562 cells Developmental Therapeutics Program (NCI/NIH) N/A
Human: leukemia JURKAT cells Developmental Therapeutics Program (NCI/NIH) N/A
Human: leukemia THP-1 cells Developmental Therapeutics Program (NCI/NIH) N/A
Human: leukemia HL-60 cells Dr. T. Breitman
NCI, NIH
N/A
Human: leukemia HAP-1 cells Horizon Discovery N/A
Human: lung cancer A549 cells Developmental Therapeutics Program (NCI/NIH) N/A
Human: lung cancer DMS114 cells American Type Culture Collection Cat# CRL-2066
Human: leukemia HEL cell Dr. Peter D. Aplan
NCI, NIH
N/A
CCRF-CEM SLFN11 knockout cells Murai et al., 2016 N/A
MOLT4 SLFN11 knockout cells Murai et al., 2016 N/A

Oligonucleotides

Forward primer for qPCR of SLFN11:
5′-GGCCCAGACCAAGCCTTAAT-3′
IDT oligo N/A
Reverse primer for qPCR of SLFN11:
5′-CACTGAAAGCCAGGGCAAAC-3′
IDT oligo N/A
Forward primer for qPCR of ETS-1:
5′-GTTAATGGAGTCAACCCAGC-3′
IDT oligo N/A
Reverse primer for qPCR of ETS-1:
5′-GGGTGACGACTTCTTGTTTG-3′
IDT oligo N/A
Forward primer for qPCR of GAPDH:
5′-TCAACGACCACTTTGTCAAGCT-3′
IDT oligo N/A
Reverse primer for qPCR of GAPDH:
5′-GTGAGGGTCTCTCTCTTCCTCTTGT-3′
IDT oligo N/A

Software and algorithms

GraphPad Prism 9 (software for drawing graphs and statistics analysis) GraphPad N/A
ImageJ (software for image analysis) NIH N/A
Image Lab software (software for image analysis) BioRad N/A
CellMinerCDB (web application for analysis of NCI-60, CCLE and GDSC database) Genomics & Bioinformatics Group/Developmental Therapeutics Branch/Laboratory of Molecular Pharmacology/CCR/NCI/NIH https://discover.nci.nih.gov/rsconnect/cellminercdb/
cBioPortal (web application for analysis of TCGA database) Cerami et al. (2012) and Gao et al. (2013) https://www.cbioportal.org

Other

QuantStudio 5 Real-Time PCR System Thermo Fisher Scientific N/A
ChemiDocTM Touch MP BioRad N/A