| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Antibodies | ||
| Rabbit polyclonal anti-TYK2 | Cell signaling Technology | Cat# 9312S; RRID: AB_2256719 |
| Rabbit monoclonal anti-phospho (Y1054/1055)-TYK2 (D7T8A) | Cell signaling Technology | Cat# 68790S; RRID: AB_2799752 |
| Rabbit monoclonal anti-phospho (Y1034/1035)-JAK1 (D7N4Z) | Cell signaling Technology | Cat# 74129S; RRID: AB_2799851 |
| Rabbit polyclonal anti-phospho (Y1007/1008)-JAK2 | Cell signaling Technology | Cat# 3771S; RRID: AB_330403 |
| Rabbit monoclonal anti-phospho (Y701)-STAT1 (58D6) | Cell signaling Technology | Cat# 9167S; RRID: AB_561284 |
| Rabbit polyclonal anti-phospho (T202/Y204)-p44/42 MAPK (ERK1/2) | Cell signaling Technology | Cat# 9101S; RRID: AB_331646 |
| Rabbit polyclonal anti-ETS-1 (C-20) | Santa Cruz Biotechnology | Cat# sc-350; RRID: AB_2100688 |
| Rabbit polyclonal anti-FLI-1 (C-19) | Santa Cruz Biotechnology | Cat# sc-356; RRID: AB_2106116 |
| Mouse monoclonal anti-ISG15 (F-9) | Santa Cruz Biotechnology | Cat# sc-166755; RRID: AB_2126308 |
| Mouse monoclonal anti-SLFN11 (D-2) | Santa Cruz Biotechnology | Cat# sc-515071 |
| Rabbit polyclonal anti-GAPDH | GeneTex | Cat# GTX100118; RRID: AB_1080976 |
| ECL anti-mouse IgG, horseradish peroxidase linked whole antibody (from sheep) | GE Healthcare | cat# NA931; RRID: AB_772210 |
| ECL anti-rabbit IgG, horseradish peroxidase linked whole antibody (from donkey) | GE Healthcare | cat# NA934; RRID: AB_772206 |
| Chemicals, peptides, and recombinant proteins | ||
| Recombinant human interferon-gamma | Thermo Fisher Scientific | Cat# PHC4031 |
| Human interferon-alpha a protein (alpha 2a) | PBL assay science | Cat# 11101-2 |
| Cerdulatinib | MedChemExpress | Cat# HY-15999 |
| Ruxolitinib | MedChemExpress | Cat# HY-50856 |
| Tofacitinib | MedChemExpress | Cat# HY-40354 |
| MK-2206 dihydrochloride | MedChemExpress | Cat# HY-10358 |
| SCH772984 | MedChemExpress | Cat# HY-50846 |
| TK216 | Shelleckchem | Cat# S9718 |
| LY294002 (InSolution) | Sigma-Aldrich | Cat# 440204 |
| Retinoic acid | Sigma-Aldrich | Cat# R2625 |
| Critical commercial assays | ||
| TRIzol reagent | Invitrogen | Cat# 15596026 |
| PureLink RNA Mini Kit | Invitrogen | Cat# 12183025 |
| SuperScript II Reverse Transcriptase Kit | Invitrogen | Cat# 18064022 |
| FastStart Universal SYBR Green Master (Rox) | Sigma-Aldrich | Cat# 4913850001 |
| protease inhibitor cocktail (100x) | Cell signaling Technology | Cat# 5871S |
| Pierce phosphatase inhibitor mini tablets | Thermo Fisher Scientific | Cat# A32957 |
| Novex tris-glycine SDS sample buffer | Invitrogen | Cat# LC2676 |
| Tris/glycine/SDS buffer (10x) | BioRad | Cat# 1610732 |
| Novex tris-glycine transfer buffer (25x) | Invitrogen | Cat# LC3675 |
| Blotting-Grade Blocker | BioRad | Cat# 1706404 |
| Immun-Blot PVDF membranes | BioRad | Cat# 1620177 |
| Experimental models: Cell lines | ||
| Human: prostate cancer DU145 cells | Developmental Therapeutics Program (NCI/NIH) | N/A |
| Human: colon cancer HCT116 cells | Developmental Therapeutics Program (NCI/NIH) | N/A |
| Human: leukemia CCRF-CEM cells | Developmental Therapeutics Program (NCI/NIH) | N/A |
| Human: leukemia MOLT4 cells | Developmental Therapeutics Program (NCI/NIH) | N/A |
| Human: leukemia K562 cells | Developmental Therapeutics Program (NCI/NIH) | N/A |
| Human: leukemia JURKAT cells | Developmental Therapeutics Program (NCI/NIH) | N/A |
| Human: leukemia THP-1 cells | Developmental Therapeutics Program (NCI/NIH) | N/A |
| Human: leukemia HL-60 cells | Dr. T. Breitman NCI, NIH |
N/A |
| Human: leukemia HAP-1 cells | Horizon Discovery | N/A |
| Human: lung cancer A549 cells | Developmental Therapeutics Program (NCI/NIH) | N/A |
| Human: lung cancer DMS114 cells | American Type Culture Collection | Cat# CRL-2066 |
| Human: leukemia HEL cell | Dr. Peter D. Aplan NCI, NIH |
N/A |
| CCRF-CEM SLFN11 knockout cells | Murai et al., 2016 | N/A |
| MOLT4 SLFN11 knockout cells | Murai et al., 2016 | N/A |
| Oligonucleotides | ||
| Forward primer for qPCR of SLFN11: 5′-GGCCCAGACCAAGCCTTAAT-3′ |
IDT oligo | N/A |
| Reverse primer for qPCR of SLFN11: 5′-CACTGAAAGCCAGGGCAAAC-3′ |
IDT oligo | N/A |
| Forward primer for qPCR of ETS-1: 5′-GTTAATGGAGTCAACCCAGC-3′ |
IDT oligo | N/A |
| Reverse primer for qPCR of ETS-1: 5′-GGGTGACGACTTCTTGTTTG-3′ |
IDT oligo | N/A |
| Forward primer for qPCR of GAPDH: 5′-TCAACGACCACTTTGTCAAGCT-3′ |
IDT oligo | N/A |
| Reverse primer for qPCR of GAPDH: 5′-GTGAGGGTCTCTCTCTTCCTCTTGT-3′ |
IDT oligo | N/A |
| Software and algorithms | ||
| GraphPad Prism 9 (software for drawing graphs and statistics analysis) | GraphPad | N/A |
| ImageJ (software for image analysis) | NIH | N/A |
| Image Lab software (software for image analysis) | BioRad | N/A |
| CellMinerCDB (web application for analysis of NCI-60, CCLE and GDSC database) | Genomics & Bioinformatics Group/Developmental Therapeutics Branch/Laboratory of Molecular Pharmacology/CCR/NCI/NIH | https://discover.nci.nih.gov/rsconnect/cellminercdb/ |
| cBioPortal (web application for analysis of TCGA database) | Cerami et al. (2012) and Gao et al. (2013) | https://www.cbioportal.org |
| Other | ||
| QuantStudio 5 Real-Time PCR System | Thermo Fisher Scientific | N/A |
| ChemiDocTM Touch MP | BioRad | N/A |