TABLE 2.
SNP | CHR | POS | Effect allele | Other allele | MAF | Meta OR | Meta p value | Q | Pediatric cohort (n = 310) | Adult cohort (n = 775) | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
OR | SE | p value | OR | SE | p value | |||||||||
rs35150895 | 4 | 67445833 | A | G | 0.05 | 3.45 | 6.28E−07 | 0.29 | 4.92 | 0.42 | 1.39E−04 | 2.84 | 0.31 | 7.22E−04 |
rs7784948 | 7 | 124069511 | T | G | 0.09 | 2.58 | 1.55E−06 | 0.99 | 2.59 | 0.33 | 4.50E−03 | 2.58 | 0.24 | 1.07E−04 |
rs72935945 | 6 | 110655675 | T | C | 0.19 | 2.23 | 3.21E−06 | 0.99 | 2.23 | 0.29 | 4.97E−03 | 2.24 | 0.22 | 2.03E−04 |
rs9998058 | 4 | 169596553 | C | T | 0.07 | 2.71 | 6.14E−06 | 0.56 | 3.25 | 0.38 | 2.15E−03 | 2.48 | 0.27 | 7.50E−04 |
rs10421769 | 19 | 33605312 | C | T | 0.33 | 0.42 | 6.32E−06 | 0.30 | 0.32 | 0.33 | 4.92E−04 | 0.49 | 0.24 | 2.28E−03 |
rs3849111 | 9 | 111994722 | A | C | 0.37 | 0.43 | 6.53E−06 | 0.33 | 0.54 | 0.29 | 3.04E−02 | 0.37 | 0.24 | 4.64E−05 |
rs56222681 | 6 | 156478953 | A | G | 0.14 | 2.30 | 8.82E−06 | 0.59 | 2.64 | 0.31 | 1.81E−03 | 2.13 | 0.24 | 1.32E−03 |
rs1965492 | 15 | 76773326 | C | A | 0.42 | 1.98 | 8.89E−06 | 0.76 | 1.87 | 0.24 | 1.01E−02 | 2.05 | 0.20 | 2.77E−04 |
rs56076602 | 21 | 42051160 | G | C | 0.08 | 2.78 | 9.18E−06 | 0.10 | 4.57 | 0.38 | 5.66E−05 | 2.07 | 0.29 | 1.25E−02 |
rs10049756 | 4 | 28872833 | A | G | 0.12 | 2.27 | 1.01E−05 | 0.95 | 2.24 | 0.30 | 6.60E−03 | 2.29 | 0.24 | 4.97E−04 |
rs2818388 | 10 | 133953647 | A | C | 0.07 | 2.67 | 1.17E−05 | 0.49 | 2.19 | 0.36 | 3.09E−02 | 3.01 | 0.28 | 1.06E−04 |
rs34979186 | 8 | 28445552 | G | A | 0.06 | 2.90 | 1.33E−05 | 0.76 | 3.21 | 0.40 | 3.95E−03 | 2.74 | 0.31 | 1.04E−03 |
rs72789970 | 2 | 37970145 | G | A | 0.05 | 2.92 | 1.37E−05 | 0.92 | 2.82 | 0.42 | 1.40E−02 | 2.97 | 0.30 | 3.31E−04 |
rs1288906 | 5 | 103023993 | T | A | 0.16 | 2.16 | 1.50E−05 | 0.56 | 1.86 | 0.31 | 4.57E−02 | 2.32 | 0.22 | 1.03E−04 |
rs9951171 | 18 | 9749879 | A | G | 0.41 | 0.48 | 1.76E−05 | 0.86 | 0.47 | 0.27 | 5.21E−03 | 0.50 | 0.22 | 1.10E−03 |
rs73179545 | 3 | 176238294 | C | T | 0.08 | 2.70 | 1.90E−05 | 0.39 | 3.60 | 0.41 | 1.71E−03 | 2.35 | 0.28 | 2.44E−03 |
rs1566159 | 8 | 104090278 | A | T | 0.36 | 0.47 | 2.04E−05 | 0.73 | 0.44 | 0.28 | 2.91E−03 | 0.50 | 0.23 | 2.16E−03 |
rs10904015 | 10 | 3327415 | G | A | 0.22 | 2.01 | 2.08E−05 | 0.74 | 1.86 | 0.27 | 2.36E−02 | 2.09 | 0.20 | 2.94E−04 |
rs59286975 | 10 | 64736664 | A | G | 0.07 | 2.70 | 2.15E−05 | 0.96 | 2.66 | 0.41 | 1.80E−02 | 2.72 | 0.28 | 4.15E−04 |
rs2827676 | 21 | 24030707 | T | C | 0.13 | 2.25 | 2.15E−05 | 0.57 | 1.93 | 0.33 | 4.35E−02 | 2.43 | 0.24 | 1.56E−04 |
rs9957543 | 18 | 31659307 | G | C | 0.42 | 0.48 | 2.21E−05 | 0.60 | 0.54 | 0.28 | 2.62E−02 | 0.45 | 0.22 | 2.61E−04 |
rs932327 | 22 | 37905173 | G | A | 0.15 | 2.11 | 2.43E−05 | 0.47 | 2.51 | 0.30 | 1.93E−03 | 1.92 | 0.22 | 3.13E−03 |
rs11933913 | 4 | 169609033 | G | A | 0.17 | 2.10 | 2.45E−05 | 0.14 | 2.96 | 0.29 | 1.96E−04 | 1.72 | 0.22 | 1.33E−02 |
rs6438086 | 3 | 112359986 | A | G | 0.33 | 0.45 | 2.52E−05 | 0.46 | 0.37 | 0.33 | 2.46E−03 | 0.50 | 0.23 | 2.51E−03 |
rs77944815 | 4 | 141194295 | T | C | 0.08 | 2.53 | 2.59E−05 | 0.76 | 2.33 | 0.35 | 1.64E−02 | 2.67 | 0.28 | 5.24E−04 |
rs10917696 | 1 | 163149325 | C | T | 0.22 | 2.02 | 2.63E−05 | 0.57 | 1.77 | 0.29 | 4.64E−02 | 2.16 | 0.21 | 1.80E−04 |
rs72816289 | 5 | 163771489 | G | A | 0.07 | 2.83 | 2.67E−05 | 0.41 | 3.62 | 0.39 | 1.04E−03 | 2.40 | 0.32 | 6.02E−03 |
rs11903647 | 2 | 34027682 | G | A | 0.10 | 2.36 | 2.91E−05 | 0.87 | 2.47 | 0.35 | 8.78E−03 | 2.30 | 0.26 | 1.11E−03 |
rs6571194 | 6 | 96755269 | C | T | 0.28 | 0.42 | 3.03E−05 | 0.44 | 0.51 | 0.33 | 4.12E−02 | 0.37 | 0.27 | 1.99E−04 |
rs969663 | 13 | 69408347 | C | T | 0.46 | 1.89 | 3.12E−05 | 0.43 | 1.63 | 0.24 | 4.44E−02 | 2.08 | 0.20 | 1.92E−04 |
rs35752324 | 14 | 100134209 | T | C | 0.13 | 2.23 | 3.34E−05 | 0.99 | 2.24 | 0.34 | 1.89E−02 | 2.23 | 0.23 | 6.24E−04 |
rs71582000 | 7 | 128780057 | G | A | 0.08 | 2.51 | 3.59E−05 | 0.89 | 2.40 | 0.39 | 2.41E−02 | 2.57 | 0.27 | 5.30E−04 |
rs953226 | 9 | 129286868 | A | C | 0.08 | 2.41 | 4.13E−05 | 0.79 | 2.62 | 0.37 | 9.81E−03 | 2.32 | 0.26 | 1.40E−03 |
rs2292630 | 15 | 29429143 | T | C | 0.06 | 2.88 | 4.19E−05 | 0.88 | 2.72 | 0.46 | 2.92E−02 | 2.96 | 0.31 | 5.18E−04 |
rs11208611 | 1 | 65684425 | T | C | 0.32 | 1.92 | 4.22E−05 | 0.94 | 1.89 | 0.26 | 1.38E−02 | 1.94 | 0.20 | 1.07E−03 |
rs4745114 | 9 | 74304506 | A | G | 0.46 | 0.52 | 4.43E−05 | 0.44 | 0.44 | 0.27 | 2.09E−03 | 0.57 | 0.20 | 5.18E−03 |
rs5994697 | 22 | 33607304 | A | C | 0.33 | 0.47 | 4.54E−05 | 0.37 | 0.56 | 0.28 | 4.04E−02 | 0.40 | 0.25 | 2.74E−04 |
rs17380507 | 15 | 77235361 | T | C | 0.48 | 0.53 | 4.58E−05 | 0.87 | 0.54 | 0.25 | 1.53E−02 | 0.52 | 0.20 | 1.04E−03 |
rs75030100 | 1 | 73511653 | T | G | 0.07 | 2.63 | 4.75E−05 | 0.14 | 4.34 | 0.41 | 3.68E−04 | 2.05 | 0.29 | 1.37E−02 |
rs11825966 | 11 | 6734161 | T | C | 0.06 | 2.63 | 4.75E−05 | 0.73 | 2.35 | 0.41 | 3.90E−02 | 2.79 | 0.29 | 4.30E−04 |
Meta analyses of two genome‐wide association (GWA) analyses: the adult and the paediatric OLT cohort. Variants with both significant p‐value in adult and paediatric cohort (p < .05) are shown, and variants are sorted by p‐value (with the cut‐off value of 5 × 10−05). The GWA results in adult and pediatric OLT cohort are reported by OR, SE and p‐value, respectively.
Abbreviations: CHR, chromosome; MAF, minor allele frequency; OR, odd ratio; POS, position per base‐pair; Q, p‐value for Cochrane's Q statistic; SE, standard error of OR; SNP, single‐nucleotide polymorphism.