KEY RESOURCES TABLE
| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Chemicals, Peptides, and Recombinant Proteins | ||
| FM 4-64 (membrane stain) | ThermoFisher Scientific | T3166 |
| Propidium Iodide | Sigma-Aldrich | P4170 |
| Deposited data | ||
| Confocal raw data (FM1-FM6 and lfy-12) and segmented data | University of Cambridge open data repository | DOI:https://doi.org/10.17863/CAM.61991 |
| Experimental Models: Organisms/Strains | ||
| Arabidopsis Thaliana Col-0 with modified, acetylated Yellow Fluorescent Protein (YFP) | Willis et al (2016) | N/A |
| Arabidopsis Thaliana mutant lfy-12 | Maizel and Weigel (2004) | Nottingham Arabidopsis Stock Centre (NASC) |
| Oligonucleotides | ||
| AG S | acggcgtaccaatcggagct | |
| AG T7 AS | tgtaatacgactcactatagggcttacactaa ctggagagcgg |
|
| ANT S | atgaagtctttttgtgataa | |
| ANT T7 AS | tgtaatacgactcactatagggctcaagaatc agcccaagcag |
|
| AP1 T7 AS | tgtaatacgactcactatagggctcatgcggc gaagcagccaa |
|
| AP1 S | atgggaaggggtagggttca | |
| CUC1 S | atcgatgttgatgtgtttaa | |
| CUC1 T7 AS | tgtaatacgactcactatagggctcagagagt aaacggccaca |
|
| CUC2 S | tgtaatacgactcactatagggctcagtagttc caaatacagt |
|
| CUC2 T7 AS | atggacattccgtattacca | |
| FIL S | atgtctatgtcgtctatgtc | |
| FIL T7 AS | tgtaatacgactcactatagggcttaataagg agtcacaccaa |
|
| REV S | atggagatggcggtggctaa | |
| REV T7 AS | tgtaatacgactcactatagggctcacacaa aagaccagttta |
|
| AS2 S | atggcatcttcttcaacaaa | |
| AS2 T7 AS | tgtaatacgactcactatagggctcaagacg gatcaacagtac |
|
| ETT S | atgggtggtttaatcgatct | |
| ETT T7 AS | tgtaatacgactcactatagggcctagagag caatgtctagca |
|
| ANT S | ccagcatggaaggtggcaagcacgg | |
| FIL S | gctccagctccagctcggtcctc | |
| CUC2 S | cgaccatggcggagacagcc | |
| ANT S | atgaagtctttttgtgataatgatgataat | |
| CUC2 S | atggacattccgtattaccactacgaccat | |
| FIL S | atgtctatgtcgtctatgtcctccccttcc | |
| AP2 S | atgtgggatctaaacgacgcaccacaccaa | |
| AP2 T7 AS | tgtaatacgactcactatagggctcaagaag gtctcatgagag |
|
| AP3 S | atggcgagagggaagatccagatcaagag g |
|
| AP3 T7 AS | tgtaatacgactcactatagggcttattcaaga agatggaagg |
|
| MP S | atgatggcttcattgtcttgtgttgaagac | |
| MP T7 AS | tgtaatacgactcactatagggcttatgaaac agaagtcttaa |
|
| AS1 S | atgaaagagagacaacgttggagtggtgaa | |
| AS1 T7 AS | tgtaatacgactcactatagggctcaggggc ggtctaatctgc |
|
| LFY S | atggatcctgaaggtttcacgagtggctta | |
| LFY T7 AS | tgtaatacgactcactatagggcctagaaac gcaagtcgtcgc |
|
| AHP6 S | atgttggggttgggtgtggaccggcttcaa | |
| AHP6 T7 AS | tgtaatacgactcactatagggcttacattgga tatctgactc |
|
| PHB S | atgatgatggtccattcgatgagcagagat | |
| PHB T7 AS | tgtaatacgactcactatagggctcaaacga acgaccaattca |
|
| PHV S | atgatggctcatcactccatggacgataga | |
| PHV T7 AS | tgtaatacgactcactatagggctcaaacaaacgaccaactaa | |
| PI S | atgggtagaggaaagatcgagataaagacg | |
| PI T7 AS | tgtaatacgactcactatagggctcaatcgatgaccaaagaca | |
| SEP3 S | atgggaagagggagagtagaattgaagagg | |
| SEP3 T7 AS | tgtaatacgactcactatagggctcaaatagagttggtgtcat | |
| STM S | atggagagtggttccaacagcacttcttgt | |
| STM T7 AS | tgtaatacgactcactatagggctcaaagcatggtggaggaga | |
| ARF4 S | atggaatttgacttgaatactgagattgcg | |
| ARF4 T7 AS | tgtaatacgactcactatagggcctaaaccctagtgattgtag | |
| WUS S | atggagccgccacagcatcagcatcatcat | |
| WUS T7 AS | tgtaatacgactcactatagggcctagttcagacgtagctcaa | |
| Software and Algorithms | ||
| MARS-ALT (cell segmentation–automated lineage tracking) | (Fernandez et al., 2010) | https://www.quantitative-plant.org/software/mars-alt |
| StackReg ImageJ plugin | (Willis et al., 2016) (Thévenaz et al., 1998) |
https://github.com/fiji-BIG/StackReg/blob/master/src/main/java/StackReg_.java |
| Spatio-temporal registration and interpolation of microscopy images | (Michelin et al., 2016) (Malandain and Michelin, 2017) |
N/A |
| MorphoNet | (Leggio et al., 2019) | https://morphonet.org/ |
| AtlasViewer | N/A | https://gitlab.com/slcu/teamHJ/publications/refahi_etal_2020/-/tree/master/atlasviewer/atlasviewer |
| Scipy | (Virtanen et al., 2020a, 2020b) | RRID:SCR_008058 |
| IPython | (Perez and Granger, 2007) | RRID:SCR_001658 |
| QHull Convex hull algorithm | (Barber et al., 1996) | http://qhull.org/ |
| Mypy (optional type checking for Python) | http://mypy-lang.org/ | N/A |