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. 2021 Oct 15;11:20510. doi: 10.1038/s41598-021-99895-5

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Predicted probability values (and 95% confidence intervals) of the GLMM model estimated for each tool for (a) WGS and (b) WES datasets. In light grey, the raw data from the haplogroup classification results. JML James Lick’s, HPG Haplogrep, MTO MitoTool, HPF Haplofind, EMA EMMA, PHY Phy-Mer, MTS MitoSuite, MIX MixEmt, HPC Haplocheck, HPT Haplotracker, HPR HaploGrouper.