Table 2.
Case-specific SNVs and indels of two affected dogs (one WGS and one WES) and SVs and MEIs of one affected dog (WGS)
| Variants | SNVs and indels (N) | SVs (N) | MEIs (N) | |||
|---|---|---|---|---|---|---|
| All | In ROH | All | In ROH | All | In ROH | |
| Total | 32 | 6 | 63 | 0 | 32 | 1 |
| Exonic | 10 | 2 | 5 | 0 | 0 | 0 |
| Intronic | 13 | 3 | 18 | 0 | 6 | 0 |
| Splicing | 0 | 0 | 0 | 0 | 1 | 0 |
| UTR | 4 | 1 | 1 | 0 | 0 | 0 |
| Other | 5 | 0 | 39 | 0 | 25 | 1 |
The variants were categorized according to NCBI Annotation Release 105
SNV single nucleotide variant, indel small insertion or deletion, SV structural variant, MEI mobile element insertion, ROH runs of homozygosity