Table 1.
Sample | Read orientation | Mean read quality (Phred score) | Number of reads | %GC | % Reads with Q > 30 | Number of bases (MB) | Mean read length (bp) | # Reads aligned (% alignment) | # Peaks identified (q-value < .05) | Average peak pileup | Average peak length |
---|---|---|---|---|---|---|---|---|---|---|---|
H3K4me3-Control | R1 | 39.19 | 54673290 | 40.2 | 95.07 | 8255.67 | 151 | 98,609,122 (93.67) | 26918 | 54.30 | 1448.31 |
R2 | 37.93 | 54673290 | 40.56 | 90.45 | 8255.67 | 151 | |||||
H3K4me3-6 h | R1 | 39.05 | 68686449 | 50.53 | 94.68 | 10371.65 | 151 | 131,223,721 (98.99) | 71174 | 117.84 | 1327.1 |
R2 | 37.3 | 68686449 | 50.83 | 88.34 | 10371.65 | 151 | |||||
H3K4me3-24 h | R1 | 39.05 | 69591691 | 50.36 | 94.66 | 10508.35 | 151 | 132,970,431 (98.82) | 73630 | 116.57 | 1299.18 |
R2 | 37.41 | 69591691 | 50.63 | 88.76 | 10508.35 | 151 |