KEY RESOURCES TABLE
| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Bacterial and Virus Strains | ||
| Aeromonas veronii ZOR0001 | Karen Guillemin lab; Stephens et al., 2016 | BioProject Accession PRJNA205572 |
| Aeromonas caviae ZOR0002 | Karen Guillemin lab; Stephens et al., 2016 | BioProject Accession PRJNA205572 |
| Aeromonas veronii ZOR0001, ΔspdE | This study | N/A |
| Aeromonas veronii ZOR0001, ΔcheA | This study | N/A |
| Aeromonas veronii ZOR0001, ΔspdE_comp | This study | N/A |
| Aeromonas veronii ZOR0001, ΔspdE_compevol | This study | N/A |
| Aeromonas veronii ZOR0001, ΔspdE_compAer02 | This study | N/A |
| Aeromonas veronii ZOR0001, WTanc_OE | This study | N/A |
| Aeromonas veronii ZOR0001, dTomato | This study | N/A |
| Aeromonas veronii ZOR0001, superfolder GFP | This study | N/A |
| Escherichia coli BL21 DE3 | New England Biolabs | Cat# C2527H |
| Escherichia coli SM10 | Karen Guillemin lab | N/A |
| Chemicals, Peptides, and Recombinant Proteins | ||
| Ni-NTA resin | Qiagen | Cat# 30210 |
| SYPRO Orange dye | Thermo Fisher | Cat# S6650 |
| Collagenase P | Sigma | Cat# 11213857001 |
| Critical Commercial Assays | ||
| Nextera XT Library Prep Kit | Illumina | Cat# FC-131–1096 |
| Promega Wizard genomic DNA purification kit | Thermo Fisher | Cat# PR-A1120 |
| Quant-iT dsDNA HS kit | Thermo Fisher | Cat# Q32851 |
| Deposited Data | ||
| Raw sequence reads | This study | BioProject Accession PRJNA699275 (https://www.ncbi.nlm.nih.gov/sra/PRJNA699275) |
| A02 SpdEpp protein structure | This study | PDB ID: 7K5N |
| Experimental Models: Organisms/Strains | ||
| AB x Tu wild type zebrafish, Danio rerio | Univ. or Oregon Zebrafish facility | N/A |
| Myd88 mutant zebrafish, myd88−/−, Danio rerio | Karen Guillemin lab; Burns et al., 2017 | N/A |
| Recombinant DNA | ||
| Plasmid: Aer01 spdEpp pBH | This study | N/A |
| Plasmid: Aer02 spdEpp pBH | This study | N/A |
| Plasmid: Aer01 spdEpp W140A pBH | This study | N/A |
| Plasmid: Aer01 spdEpp Y157A pBH | This study | N/A |
| Plasmid: Aer01 spdEpp Y211A pBH | This study | N/A |
| Plasmid: pAX1 allelic exchange vector | Karen Guillemin lab; Wiles et al., 2018 | N/A |
| Software and Algorithms | ||
| breseq | Deatherage et al., 2014 | https://barricklab.org/twiki/bin/view/Lab/ToolsBacterialGenomeResequencing |
| Phenix mr_rosetta | DiMaio et al., 2011 | https://www.phenixonline.org/documentation/reference/mr_rosetta.html |
| particle tracking software | Parthasarathy lab Univ. of Oregon; GitHub | https://github.com/rplab/TrackingGUI_and_Localization_Public |
| Clustal Omega | McWilliam et al., 2013; Sievers et al., 2011 | https://www.ebi.ac.uk/Tools/msa/clustalo/ |
| BoxShade | N/A | https://embnet.vitalit.ch/software/BOX_form.html |
| HKL2000 suite | Otwinowski and Minor, 1997 | https://hklxray.com/hkl-2000 |
| Phenix 1.16.3549 | Adams et al., 2010 | https://www.phenixonline.org/ |
| PyMOL 2.4.0 | Schrödinger, LLC | https://pymol.org/2/ |
| Other | ||
| Detailed protocol for genetically modifying Aeromonas | figshare.com | https://doi.org/10.6084/m9.figshare.7040258.v1 |