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. Author manuscript; available in PMC: 2022 Aug 11.
Published in final edited form as: Cell Host Microbe. 2021 Jul 6;29(8):1221–1234.e8. doi: 10.1016/j.chom.2021.06.003

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Bacterial and Virus Strains
Aeromonas veronii ZOR0001 Karen Guillemin lab; Stephens et al., 2016 BioProject Accession PRJNA205572
Aeromonas caviae ZOR0002 Karen Guillemin lab; Stephens et al., 2016 BioProject Accession PRJNA205572
Aeromonas veronii ZOR0001, ΔspdE This study N/A
Aeromonas veronii ZOR0001, ΔcheA This study N/A
Aeromonas veronii ZOR0001, ΔspdE_comp This study N/A
Aeromonas veronii ZOR0001, ΔspdE_compevol This study N/A
Aeromonas veronii ZOR0001, ΔspdE_compAer02 This study N/A
Aeromonas veronii ZOR0001, WTanc_OE This study N/A
Aeromonas veronii ZOR0001, dTomato This study N/A
Aeromonas veronii ZOR0001, superfolder GFP This study N/A
Escherichia coli BL21 DE3 New England Biolabs Cat# C2527H
Escherichia coli SM10 Karen Guillemin lab N/A
Chemicals, Peptides, and Recombinant Proteins
Ni-NTA resin Qiagen Cat# 30210
SYPRO Orange dye Thermo Fisher Cat# S6650
Collagenase P Sigma Cat# 11213857001
Critical Commercial Assays
Nextera XT Library Prep Kit Illumina Cat# FC-131–1096
Promega Wizard genomic DNA purification kit Thermo Fisher Cat# PR-A1120
Quant-iT dsDNA HS kit Thermo Fisher Cat# Q32851
Deposited Data
Raw sequence reads This study BioProject Accession PRJNA699275 (https://www.ncbi.nlm.nih.gov/sra/PRJNA699275)
A02 SpdEpp protein structure This study PDB ID: 7K5N
Experimental Models: Organisms/Strains
AB x Tu wild type zebrafish, Danio rerio Univ. or Oregon Zebrafish facility N/A
Myd88 mutant zebrafish, myd88−/−, Danio rerio Karen Guillemin lab; Burns et al., 2017 N/A
Recombinant DNA
Plasmid: Aer01 spdEpp pBH This study N/A
Plasmid: Aer02 spdEpp pBH This study N/A
Plasmid: Aer01 spdEpp W140A pBH This study N/A
Plasmid: Aer01 spdEpp Y157A pBH This study N/A
Plasmid: Aer01 spdEpp Y211A pBH This study N/A
Plasmid: pAX1 allelic exchange vector Karen Guillemin lab; Wiles et al., 2018 N/A
Software and Algorithms
breseq Deatherage et al., 2014 https://barricklab.org/twiki/bin/view/Lab/ToolsBacterialGenomeResequencing
Phenix mr_rosetta DiMaio et al., 2011 https://www.phenixonline.org/documentation/reference/mr_rosetta.html
particle tracking software Parthasarathy lab Univ. of Oregon; GitHub https://github.com/rplab/TrackingGUI_and_Localization_Public
Clustal Omega McWilliam et al., 2013; Sievers et al., 2011 https://www.ebi.ac.uk/Tools/msa/clustalo/
BoxShade N/A https://embnet.vitalit.ch/software/BOX_form.html
HKL2000 suite Otwinowski and Minor, 1997 https://hklxray.com/hkl-2000
Phenix 1.16.3549 Adams et al., 2010 https://www.phenixonline.org/
PyMOL 2.4.0 Schrödinger, LLC https://pymol.org/2/
Other
Detailed protocol for genetically modifying Aeromonas figshare.com https://doi.org/10.6084/m9.figshare.7040258.v1