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Summary of per-read and per-site performances across all major evaluation criteria. Summary of A per-read performance (F1 score), B per-site performance (Pearson correlation coefficient), and resource usage. Tools are ranked by their average performance across the criteria, with the numerical values of good = 2, intermediate = 1, poor = 0. Details in evaluation criteria and cutoff values for performance categories are available in the Methods and Additional file 2: Table S13
