Table 2.
MND ADA vector integration site data
Patient | Time (mo) | VCN | Unique integrants | Chao 1* | Shannon† | >20% clones‡ | Near proto-oncogene‡ |
---|---|---|---|---|---|---|---|
401 | 24 | 0.010 | 9 | 12 | 1.98 | Yes (1) | No |
82 | 0.105 | 27 | 50 | 2.27 | No | No | |
402 | 21 | 0. 742 | 729 | 1,909 | 5.89 | No | MECOM |
120 | 0.476 | 430 | 1,100 | 5.45 | No | MECOM | |
403 | 30 | 0.195 | 26 | 33 | 2.54 | Yes | MECOM |
118 | 0.545 | 47 | 72 | 2.51 | No | MECOM | |
404 | 24 | 0.686 | 1725 | 8750 | 7.22 | No | No |
54 | 0.540 | 353 | 1573 | 5.72 | No | No | |
405 | 42 | 0.490 | 67 | 118 | 3.86 | No | No |
60 | 0.496 | 225 | 675 | 5.03 | No | No | |
406 | 24 | 0.172 | 74 | 133 | 4.07 | No | No |
84 | 0.483 | 196 | 384 | 4.58 | No | No | |
407 | 24 | 0.401 | 25 | 28 | 1.94 | Yes (3) | No |
96 | 0.519 | 50 | 221 | 2.35 | Yes (1) | No | |
408 | 42 | 1.240 | 114 | 465 | 4.65 | No | MECOM |
84 | 1.280 | 373 | 1113 | 5.82 | No | No | |
409 | 36 | 0.287 | 73 | 191 | 4.02 | No | No |
84 | 0.627 | 247 | 701 | 4.59 | No | No | |
410 | 24 | 1.130 | 342 | 2220 | 5.79 | No | No |
72 | 0.91 | 442 | 2068 | 5.98 | No | No |
Chao 1: lower bound of total unique integrants per sample.
Shannon diversity index: measure of diversity accounting for abundance and evens of integration events; polyclonal samples have high Shannon index.
Present at ≥1% of total integrants. See supplemental Table 1 for gene details. The supplemental Figure 4 shows a further analysis of all detected MECOM integrants over time.