Table 2.
Cas9 variant | Description | |
---|---|---|
Cas9 | Cas9 | Wild-type Cas9 |
Cas9-hGem | Cas9-hGem | hGeminin is degraded by the APC/Cdh1 complex during G1 phase when the NHEJ pathway is selectively active over HDR (Gutschner et al., 2016) |
Cas9-hCtIP | Cas9-hCtIP Cas9-GSG-CtIP* Cas9-TGS-CtIP** | hCtIP “HDR enhancer element” is involved in the DNA end resection. Involved in recruiting other factors to initiate repair (Charpentier et al., 2018). |
Cas9-hGem-hCtIP | ||
Cas9-UL12 | Cas9-UL12 | UL12 increases recombination by the single-strand annealing (SSA) pathway and inhibits NHEJ (Balasubramanian et al., 2010). |
Cas9-hGem-UL12 | ||
Cas9-dn53BP1 | Cas9-dn53BP1 | A mouse dominant negative 53BP1 is expected to reduce accumulation of 53BP1 at the DSB site, thus suppressing NHEJ (Paulsen et al., 2017) |
Cas9-DN1S Cas9-GSG-DN1S* | Amino acids 1,231–1,644 of human 53BP1; (Jayavaradhan et al., 2019) |
GSG—signifies a 12 amino acid linker made up of repeating Gly-Ser-Gly residues (GGGS)×3.
TGS—signifies a 12 amino acid linker made up of repeating Tyr-Gly-Ser residues (TGS)×4.