Table 2.
A summary of the H. californensis SRAs sequenced for this study
| Individual | SRR | Data type | Total GB | Number of reads (or pairs)—Millions | Physical coverage |
|---|---|---|---|---|---|
| Hc1 | SRR10237148, SRR10237149, SRR10237137 | PacBio WGS CLR | 27.4 | 9.7 | 247.7 |
|
| |||||
| SRR10237134 | 10X Chromium | 22.3 | 74.3 | 201.4 | |
|
| |||||
| SRR10237129, SRR10237130, SRR10237131, SRR10237132, SRR10237133 | Illumina WGS—NEBNext UII | 36.1 | 120.2 | 325.8 | |
|
| |||||
| SRR10237128 | Chicago—DpnII | 10.7 | 35.6 | 96.6 | |
|
| |||||
| SRR10237146, SRR10237147 | Chicago—MluCI | 20.9 | 69.8 | 189.2 | |
|
| |||||
| SRR10237145, SRR13784183 | HiC—DpnII—rep 1 | 50.0 | 166.5 | 451.3 | |
|
|
|||||
| SRR10237144, SRR13784182 | HiC—DpnII—rep 2 | 68.1 | 226.8 | 614.8 | |
|
|
|||||
| SRR10237139, SRR13784181 | HiC—MluCI—rep 1 | 38.1 | 127.1 | 344.5 | |
|
|
|||||
| SRR10237138, SRR13784180 | HiC—MluCI—rep 2 | 28.8 | 95.9 | 260.0 | |
|
|
|||||
| SRR10237136 | TruSeq RNA Library Prep Kit v2 (stranded) | 28.8 | 96.0 | NA | |
|
|
|||||
| SRR10403849, SRR10403581 | Iso-Seq Express | 6.0 | 2.5 | NA | |
|
| |||||
| Hc2 | SRR10237135 | Illumina TruSeq Nano DNA | 12.8 | 64.0 | 115.7 |
|
| |||||
| Hc3 | SRR12632403, SRR13784179 | HiC—DpnII | 70.2 | 233.9 | 633.8 |
Each row is a single library. For individual Hc1, the total physical coverage of DNA WGS reads is 573.5x, and the coverage for Hi-C and Chicago data is 1956.4x. More detailed information can be found in Supplementary data S1.