Table 3.

Predicted unique AMR gene sequence counts in raw reads of URBAN as detected by SRST2 vs. GraphAMR predictions from the assembly graph.

Sample ID	40	41	42	43	44	45	46	47	48	49	50	51	52
SRST2	59	55	6	0	2	6	36	0	59	2	8	54	44
GraphAMR	90	83	1	0	3	7	52	0	82	3	10	79	68

AMR annotation was done via Abricate. All tools used the CARD_v3.0.8_SRST2 database. Columns are named by the last two digits of SRA accession number.