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. 2021 Jun 14;15(11):3119–3128. doi: 10.1038/s41396-021-01012-x

Table 3.

Evolutionary timescale and bottleneck size in experimental studies.

Reference Focal host-Phage Design N0 (cfu) N1 (cfu) D n (number of transfers) t (duration) Number of generations
[43] P. aeruginosa – DMS3vir Batch 3.3 × 106 ~2 × 107 100 2 3 days ~15.9
[50, 51] E. coli – P10 (in vitro only) Batch 108 10 3 24 days ~13.3
[36, 46, 49] P. fluorescens – phi2 (Φ2) Batch 106.75 0 48 days
[40] P. aeruginosa – PT7 Batch 3.8 × 105 7 4 16 days ~11.2
[38] Klebsiella sp. – Klebsiella-phage Cont. 8.7 × 106 3.0 × 108 0.1 3 days ~5.4
[48] Pseudoalteromonas sp. #1 – Pseudoalteromonas sp. #1 phage; Cont. ~104.9 ~106 1 9.375 days ~13.0
Pseudoalteromonas sp. #2 – Pseudoalteromonas sp. #2 phage; ~104.5 ~105.9 ~14.0
Photobacterium sp. – Photobacterium sp. phage; ~104.25 ~104 ~9.4
Vibrio sp. – Vibrio sp. phage ~104.5 ~105.8 ~13.7

Details on reviewed experiments are listed here, including the type of experiment (batch or continuous), size of the initial inoculum population (N0), the size of the population before the first transfer (for batch culture) or at peak (for continuous culture) (N1), the dilution per transfer (for batch culture) or per day (for continuous culture) (D), the number of transfers (for batch culture only) (n), and the total duration of the experiment (t). N1 was estimated from data (Figs. S1, S3) or visually from published figures. The number of bacterial generations in each experiment was estimated as: batch culture generations = log2(N1/N0) + n × log2(D), or continuous culture generations = log2(N1/N0) + t × D. When N1 was unavailable for batch culture experiments, it was assumed growth from inoculum to first transfer was equivalent to subsequent dilutions, i.e., number of generations = (n + 1) × log2(D).