Table 2.

SNPs significant for clinical mastitis incidence traits at genome-wide suggestive levels (p ≤ 5 × 10⁻⁴) of significance

rs ID of SNP	BTA	Position	p value	MAF	Alleles
Clinical mastitis incidence in first lactation
rs41568040	11	102,911,946	2.06E−05	0.08	G/A
rs134553823	4	4,668,574	4.50E−05	0.38	G/A
rs134448529	7	56,252,492	6.64E−05	0.45	C/A
rs42350672	7	56,195,602	7.65E−05	0.49	G/A
rs109412613	16	24,322,073	1.59E−04	0.08	G/A
rs134473565	13	32,725,444	1.67E−04	0.39	C/A
rs137812439	7	54,515,095	1.87E−04	0.43	G/A
rs42351443	7	56,374,904	3.55E−04	0.37	A/C
rs134482551	28	129,187	3.59E−04	0.38	G/A
rs135788866	7	50,113,395	3.63E−04	0.43	A/G
rs135954818	17	18,686,517	3.75E−04	0.06	A/C
rs135390224	19	57,094,538	4.04E−04	0.41	G/A
rs136175818	4	59,976,303	5.24E−04	0.43	A/G
Clinical mastitis incidence in second lactation
rs136667981	18	16,073,485	0.000195	0.14	G/A
rs132917076	28	20,124,697	0.000234	0.35	A/G
rs133288259	6	47,057,796	0.000261	0.46	G/A
rs136722833	3	97,530,688	0.000265	0.28	G/A
rs43349452	3	81,243,127	0.000399	0.40	A/G
rs137090832	6	30,988,645	0.000404	0.26	A/G
rs136214974	25	29,366,079	0.000447	0.38	A/G
rs41624497	6	30,990,436	0.000463	0.26	G/A
rs43710090	6	46,481,458	0.000523	0.49	A/C
Clinical mastitis incidence in third lactation
rs135185080	16	22,998,686	0.000161	0.44	A/G
rs109440280	26	36,808,909	0.000200336	0.09	G/A
rs136030221	16	24,568,849	0.00028003	0.48	G/A