Table 2.

Differently enriched KEGG pathways with targeted genes of lncRNA and mRNA of comparisons between chickens with different eggshell colors.

Comparison	Pathway	p	lncRNA	mRNA	Symbol
DB vs. DP	ECM–receptor interaction	0.040	TCONS_00009117	ENSGALT00000037104	CD4
DB vs. LB	Cell adhesion molecules	0.042	TCONS_00009117	ENSGALT00000037104	CD4
	RNA transport	0.049	TCONS_00067464	ENSGALT00000008544	-
DP vs. LB	Focal adhesion	0.011	TCONS_00002665	ENSGALT00000082154	VWF
PK vs. DB	Cytokine–cytokine receptor interaction	0.005	TCONS_00044519	ENSGALT00000000328	GH
	Jak–STAT signaling pathway	0.031	TCONS_00044523	ENSGALT00000000328	GH
PK vs. DP	Cytokine–cytokine receptor interaction	0.018	TCONS_00034554	ENSGALT00000070014	CX3CR1
	SNARE interactions in vesicular transport	0.037	TCONS_00075755	ENSGALT00000082865	-
	Neuroactive ligand–receptor interaction	0.038	TCONS_00044519	ENSGALT00000000328	GH
	Tryptophan metabolism	0.046	TCONS_00047705	ENSGALT00000016138	HAAO
PK vs. LB	ECM–receptor interaction	0.040	TCONS_00000515	ENSGALT00000012832	LAMB1
	Spliceosome	0.050	ENSGALT00000029552	ENSGALT00000040616	ENSGALT00000040616

DB, DP, LB, and PK mean chickens producing dark blue, dark brown and greenish, light blue, and pink eggshell eggs, respectively.