TABLE 1.
Mutations observed in our sequences compared with SARS-CoV-2 isolate Wuhan-Hu-1
| GenBank accession no. | SRA accession no. | Genome size (bp) | Coverage (%) | GC content (%) | Nucleotide variations | Amino acid variations |
|---|---|---|---|---|---|---|
| MZ674361 | SRR16071953 | 29,769 | 99.55 | 37.99 | G210T, C241T, C1191T, C1267T, C3037T, G3875A, C5184T, C6539T, C9891T, T11418C, T12946C, C14262T, C14408T, G15451A, T16326C, C16466T, C17288T, A20262G, C20320T, C21618G | ORF1ab: P129L, P822L, D70G, A446V, V149A, P323L, G671S, P77L, P46L, A108V; S protein: T19R, E156G, F157del, R158del, L452R, T478K, D614G, P681R, D950N, L1141W; NS3: S26L; E protein: V62F; M protein: I82T; NS6: W27L; NS7a: V82A, L116F, T120I; N protein: D63G, R203M, D377Y |
| MZ674362 | SRR16071952 | 29,769 | 99.55 | 37.98 | G210T, C241T, C1191T, C1267T, C3037T, G3875A, C5184T, C6539T, C9891T, T11418C, T12946C, C14262T, C14408T, G15451A, T16326C, C16466T, C17288T, A20262G, C20320T, C21618G | ORF1ab: P129L, A386T, P822L, H1274Y, A446V, V149A, P323L, G671S, P77L, T351I, H234Y; S protein: T19R, E156G, F157del, R158del, W258L, L452R, T478K, D614G, P681R, D950N; NS3: S26L; M protein: I82T |
| MZ674363 | SRR16071949 | 29,769 | 99.55 | 37.99 | G210T, C241T, C1191T, C1267T, C3037T, C5144T, C5184T, C9561T, C9891T, T11418C, T12946C, C14408T, C15240T, G15451A, C16466T, C18176T, A20262G, C21618G, T22917G, C22995A | ORF1ab: P129L, P822L, S336L, A446V, V149A, P323L, G671S, P77L, P46L; S protein: T19R, E156G, F157del, R158del, L452R, T478K, D614G, P681R, D950N, L1141W; NS3: S26L; E protein: V62F; M protein: I82T |
| MZ674364 | SRR16071948 | 29,769 | 99.55 | 38 | G210T, C241T, C3037T, G4181T, C6402T, C7124T, C8986T, G9053T, C10029T, A11201G, A11332G, C14408T, G15451A, C16466T, C19220T, A20130T, C21618G, T22917G, C22995A, A23403G | ORF1ab: A488S, P1228L, P1469S, V167L, T492I, T77A, P323L, G671S, P77L, A394V, E170D; S protein: T19R, E156G, F157del, R158del, L452R, T478K, D614G, P681R, D950N; NS3: S26L; M protein: I82T; NS7a: V82A, T120I; NS7b: T40I; N protein: D63G, R203M, G215C, D377Y |
| MZ674365 | SRR16071947 | 29,769 | 99.55 | 37.99 | G210T, C241T, Cl19IT, C1267T, T1623C, C3037T, G5012T, C5184T, C6539T, C7420T, C9891T, T11418C, T12946C, C13430T, C14262T, C14408T, G15451A, T16050C, C16466T, A17207G | ORF1ab: P129L, I273T, V765F, P822L, H1274Y, A446V, V149A, P136S, P323L, G671S, P77L, Y324C, H234Y; S protein: T19R, E156G, F157del, R158del, L452R, T478K, D614G, P681R, D950N; NS3: I20T, S26L, V225F; M protein: I82T; NS7a: V82A, L116F, T120I; N protein: D63G, R203M, T362I, D377Y, R385K |
| MZ674366 | SRR16071946 | 29,769 | 99.55 | 37.97 | G210T, C241T, C1191T, C1267T, C3037T, C5184T, C6539T, G7850T, C9891T, T11418C, G12067T, C12786T, T12946C, C14262T, C14408T, G15451A, C16466T, C19972T, A20262G, C20320T | ORF1ab: P129L, P822L, H1274Y, A1711S, A446V, V149A, M75I, T34I, P323L, G671S, P77L, P118S, H234Y; S protein: T19R, E156G, F157del, R158del, L452R, T478K, D614G, P681R, D950N; NS3: S26L; M protein: I82T; NS7a: V82A, L116F, T120I |
| MZ674367 | SRR16071945 | 29,769 | 99.55 | 37.95 | G210T, C241T, C2910T, C3037T, C3743T, C3787T, C4181T, C6402T, C7124T, G7936C, T8365C, C8986T, G9053T, C10029T, G11083T, A11201G, A11332G, C13368T, C14408T, G15451A | ORF1ab: T64I, H342Y, A488S, P1228L, P1469S, V167L, T492I, L37F, T77A, T115I, P323L, G671S, P77L, A394V, S288F; S protein: T19R, G142D, E156G, F157del, R158del, L452R, T478K, D614G, P681R, D950N; NS3: S26L; M protein: I82T; NS7a: V82A, T120I; NS7b: T40I; N protein: D63G, R203M, G215C, D377Y |
| MZ674368 | SRR16071944 | 29,769 | 99.55 | 37.98 | G210T, C241T, C2910T, C3037T, C3743T, C3787T, C4181T, C6402T, C7124T, G7936C, T8365C, C8986T, G9053T, C10029T, A11201G, A11332G, C13368T, C14408T, G15451A, C16466T | ORF1ab: T64I, H342Y, A488S, P1228L, P1469S, V167L, T492I, T77A, T115I, P323L, G671S, P77L, A394V; S protein: T19R, E156G, F157del, R158del, L452R, T478K, D614G, P681R, D950N; NS3: S26L; M protein: I82T; NS7a: V82A, T120I; NS7b: T40I |
| MZ674369 | SRR16071943 | 29,769 | 99.55 | 37.99 | G210T, C241T, C2910T, C3037T, C3743T, C3787T, C4181T, C6402T, C7124T, G7936C, T8365C, C8986T, G9053T, C10029T, A11201G, A11332G, C13368T, C14408T, G15451A, C16466T | ORF1ab: T64I, H342Y, A488S, P1228L, P1469S, V167L, T492I, T77A, T115I, P323L, G671S, P77L, A394V; S protein: T19R, E156G, F157del, R158del, L452R, T478K, D614G, P681R, D950N; NS3: S26L; M protein: I82T |
| MZ674370 | SRR16071942 | 29,769 | 99.55 | 37.99 | G210T, C241T, C1191T, C1267T, C3037T, A3469C, G4985A, C5184T, C8956T, C9891T, T11418C, T12946C, C14408T, A15063G, G15451A, C16466T, C18716T, A20262G, C21618G, T22917G | ORF1ab: P129L, V756I, P822L, A446V, V149A, P323L, G671S, P77L, P46L; S protein: T19R, E156G, F157del, R158del, L452R, T478K, D614G, P681R, D950N, C1243F; NS3: S26L; M protein: I82T; NS7a: V82A, L116F, T120I; N protein: D63G, R203M, D377Y |
| MZ674372 | SRR16071951 | 29,769 | 99.55 | 37.98 | G210T, C241T, C593T, A1395G, C3037T, G4181T, C5806T, C6402T, A6613G, C7124T, C8986T, G9053T, C10029T, A11201G, A11332G, C14408T, G15451A, C16466T, C19220T, C21575T | ORF1ab: H110Y, E197G, A488S, P1228L, P1469S, V167L, T492I, T77A, P323L, G671S, P77L, A394V; S protein: L5F, T19R, E156G, F157del, R158del, L452R, T478K, D614G, P681R, D950N; NS3: K21R, S26L; M protein: I82T; NS6: P57L; NS7a: V82A, T120I; NS7b: T40I; NS8: V114I; N protein: D63G, R203M, G215C, D377Y |
| MZ674371 | SRR16071950 | 29,769 | 99.55 | 37.99 | G210T, C241T, C1191T, C1267T, C3037T, G3047T, G3875A, C5184T, C6539T, T8918T, C9891T, T11418C, T12946C, C14262T, C14408T, G15451A, T16326C, C16466T, A20262G, C20320T | ORF1ab: P129L, D110Y, A386T, P822L, H1274Y, A446V, V149A, P323L, G671S, P77L, H234Y; S protein: T19R, E156G, F157del, R158del, L452R, T478K, D614G, P681R, D950N, S1252F; NS3: S26L; M protein: I82T; NS7a: V82A, L116F, T120I; N protein: D63G, R203M, T362I, D377Y, R385K |