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. 2021 Sep 30;10:e69222. doi: 10.7554/eLife.69222

Appendix 2—table 1. Chemical species and parameters in three stop codons termination model.

Variable Description
[CUAA+pep] Ribosomes at UAA with peptide chain [µM]
[CUAG+pep] Ribosomes at UAG with peptide chain [µM]
[CUGA+pep] Ribosomes at UGA with peptide chain [µM]
[DUAA1] Ribosomes at UAA with peptide chain and RF1 bound [µM]
[DUAG1] Ribosomes at UAG with peptide chain and RF1 bound [µM]
[DUAA2] Ribosomes at UAA with peptide chain and RF2 bound [µM]
[DUGA2] Ribosomes at UGA with peptide chain and RF2 bound [µM]
[C-pep] Ribosomes at all stops without peptide chain [µM]
[E4] Ribosomes at all stops without peptide chain and RF4 bound [µM]
[RF1] Free RF1 [µM]
[RF2] Free RF2 [µM]
[RF4] Free RF4 [µM]
JUAA=fUAAJ Ribosome flux through UAA [µM s−1]
JUAG=fUAGJ Ribosome flux through UAG [µM s−1]
JUGA=fUGAJ Ribosome flux through UGA [µM s−1]
k^onRF1 On-rate for RF1 [µM−1 s−1]
k^onRF2 On-rate for RF2 [µM−1 s−1]
k^onRF4 On-rate for RF4 [µM−1 s−1]
kcatRF1 Catalytic rate for RF1 [s−1]
kcatRF2 Catalytic rate for RF2 [s−1]
kcatRF4 Catalytic rate for RF4 [s−1]
RF1tot Total RF1 [µM]
RF2tot Total RF2 [µM]
RF4tot Total RF4 [µM]