Table 3.

Rare variants identified in the chromosome 10q locus, linked with AITD (GD + HT)

SNV	Position	T	U	P value	Transcript	Location of SNV	Common allele	Rare variant
AITD10.1001	58,194,262	0	9	0.0027	NM_152230:IPMK	exonic	C	T
AITD10.1002	58,191,598	0	6	0.01431	NM_152230:IPMK	exonic	T	A
AITD10.1003	58,192,372	0	6	0.01431	NM_152230:IPMK	exonic	A	G
AITD10.1004	58,192,884	0	6	0.01431	NM_152230:IPMK	exonic	A	G
AITD10.1005	58,193,478	0	6	0.01431	NM_152230:IPMK	exonic	C	A
AITD10.1006	58,195,625	0	6	0.01431	NM_152230:IPMK	exonic	G	A
AITD10.1007	58,193,779	1	8	0.01963	NM_152230:IPMK	exonic	C	T
AITD10.1008	58,193,436	2	10	0.02092	NM_152230:IPMK	exonic	C	T
AITD10.1009	58,191,617	0	5	0.02535	NM_152230:IPMK	exonic	A	G
AITD10.1010	58,191,894	0	5	0.02535	NM_152230:IPMK	exonic	T	C
AITD10.1011	58,195,907	0	5	0.02535	NM_152230:IPMK	exonic	G	_
AITD10.1012	58,195,589	1	7	0.03389	NM_152230:IPMK	exonic	GT	CC
AITD10.1013	58,195,995	1	7	0.03389	NM_152230:IPMK	exonic	A	G

Abbreviations: SNV, single nucleotide variant; T, transmitted to affected offspring; U, untransmitted to affected offspring.