Table 3.

Replication analysis using the J-MICC samples for SNPs that were associated with meat intake in a previous study

SNP	Chr:BP	Genes	EA	NEA	EAFR	β	se	P
rs3101341	1:72747844	NEGR1	T	C	0⋅800	−0⋅068	0⋅183	0⋅709
rs66495454	1:72748567	NEGR1	GTCCT	G	0⋅234	0⋅240	0⋅177	0⋅174
rs506589	1:177894287	SEC16B	C	T	0⋅270	0⋅030	0⋅165	0⋅856
rs36016753	1:187269477	-	A	G	0⋅185	0⋅243	0⋅189	0⋅198
rs10900457	1:205146726	CNTN2, RBBP5, etc.	A	G	0⋅461	0⋅144	0⋅148	0⋅330
rs62106258	2:417167	-	NA	NA	NA	NA	NA	NA
rs6786550	3:62560523	CADPS	C	T	0⋅680	0⋅085	0⋅156	0⋅586
rs7644667	3:69040601	EOGT, TMF1, etc.	C	T	0⋅064	0⋅386	0⋅299	0⋅196
rs13340130	3:81790970	GBE1	T	A	0⋅528	−0⋅002	0⋅146	0⋅990
rs701760	4:113439212	NEUROG2, LARP7	G	C	0⋅320	0⋅371	0⋅157	0⋅018
rs300046	5:37081705	NIPBL, C5orf42, etc.	G	A	0⋅500	−0⋅163	0⋅152	0⋅282
rs10064431	5:92950673	FAM172A	C	T	0⋅614	0⋅273	0⋅150	0⋅068
rs9379831	6:26175852	HIST1H2AC, HIST1H1E, etc.	A	C	0⋅165	−0⋅051	0⋅235	0⋅829
rs806794	6:26200677	HIST1H2AC, HIST1H1E, etc.	G	A	0⋅839	−0⋅078	0⋅238	0⋅744
rs35797675	7:72878044	FZD9, BAZ1B, etc.	G	T	0⋅108	−0⋅490	0⋅240	0⋅041
rs4034907	7:135050259	CNOT4, NUP205	GATAA	G	0⋅759	0⋅128	0⋅173	0⋅459
rs10125463	9:15677925	CCDC171	T	A	0⋅223	0⋅074	0⋅175	0⋅674
rs6478868	9:131927092	FAM73B, DOLPP1, etc.	C	T	0⋅106	−0⋅034	0⋅237	0⋅885
rs1912286	10:87318888	-	A	G	0⋅493	0⋅074	0⋅147	0⋅614
rs3909727	11:126587382	KIRREL3	NA	NA	NA	NA	NA	NA
rs4759074	12:54664097	CBX5, HNRNPA1, etc.	T	C	0⋅632	0⋅312	0⋅150	0⋅038
rs12103229	16:74167594	-	A	C	0⋅360	−0⋅117	0⋅152	0⋅443
rs12232804	19:42677807	ATP1A3, GRIK5, etc.	T	C	0⋅054	0⋅599	0⋅326	0⋅066
rs429358	19:45411941	PVRL2, TOMM40, etc.	C	T	0⋅101	0⋅392	0⋅244	0⋅109
rs838144	19:49250239	FUT2, MAMSTR, etc.	T	C	0⋅980	−0⋅097	0⋅642	0⋅880
rs79564737	20:43408372	RIMS4	A	G	0⋅535	−0⋅100	0⋅146	0⋅494
rs136528	22:27245262	-	C	G	0⋅634	0⋅105	0⋅152	0⋅491
rs139911	22:40704052	TNRC6B	T	C	0⋅461	−0⋅249	0⋅146	0⋅087
rs202637	22:41853928	ZC3H7B, TEF, etc.	G	A	0⋅954	0⋅312	0⋅349	0⋅371

SNP, single nucleotide polymorphism; Chr, chromosome, chromosomal position (GRCh37/hg19); EA, effect allele; NEA, non-effect allele; EAF, effect allele frequency; β, effect size; se, standard error of effect size. NA, not available in the J-MICC data – indicates no genes hit on that SNP.

We carried out a replication study on the twenty-nine identified SNPs associated with meat intake of European participants in the study by Niarchou et al.⁽¹⁸⁾.