Table 2.
Binding free energy in individual terms for both compounds bound to RdRp-RNA generated by MM-PBSA method.
S. No. | RdRp-RNA-Ligand Complexes | ΔE binding(kJ/mol) | ΔE polar solvation(kJ/mol) | SASA (kJ/mol) | ΔE Electrostatic (kJ/mol) | ΔE Van der Waals (kJ/mol) |
---|---|---|---|---|---|---|
1. | RdRp-curcumin | −42.162 | 101.798 | −13.496 | −18.137 | −112.327 |
2. | RdRp-diacetylcurcumin | −71.964 | 116.315 | −19.107 | −14.698 | −154.474 |
3. | RNA-curcumin | −40.306 | 27.351 | −6.539 | −11.487 | −49.631 |
4. | RNA-diacetylcurcumin | −80.718 | 31.556 | −8.498 | −31.535 | −72.242 |