TABLE 2.
Primer sequences for PCR amplification and sequencing of the 16S rRNA gene of Helicobacter spp.
| Set | Primer | Sequence | Sequencing primer | Size (bp) | Region on H. pylori U00679 |
|---|---|---|---|---|---|
| 1 | MR-1 | 5′-CAG-GAA-ACA-GCT-ATG-ACA-GAG-TTT-GAT-CCT-GGC-T-3′ | M13 reverse | 455 | 156 to 631 |
| MF-1 | 5′-GTT-TTC-CCA-GTC-ACG-ACG-CTG-GCA-CGG-AGT-TAG-C-3′ | M13 (−40) forward | |||
| 2 | MR-2 | 5′-CAG-GAA-ACA-GCT-ATG-ACC-GCG-TGG-AGG-ATG-AAG-C-3′ | M13 reverse | 573 | 535 to 1107 |
| MF-2 | 5′-GTT-TTC-CCA-GTC-ACG-ACT-GTC-AAG-CCT-AGG-TAA-GG-3′ | M13 (−40) forward | |||
| 3 | MR-3 | 5′-CAG-GAA-ACA-GCT-ATG-ACA-GGA-ATA-GAC-GGG-GAC-C-3′ | M13 reverse | 502 | 1026 to 1530 |
| MF-3 | 5′-GTA-AAA-CGA-CGG-CCA-GAT-GGT-GTG-ACG-GGC-GG-3′ | M13 (−20) forward |