Table 1.
The total number of human and animal stool samples collected for this study and the percentage of positive samples obtained by the PCR method.
| Host Name | Scientific Name | No. Examined | No. of Positives |
% Positives (±CL95) |
|---|---|---|---|---|
| Human | Homo sapiens | 35 | 6 | 17.14 (8.2–31.3) |
| NHPs total | 39 | 23 | 58.97 (43.0–73.7) | |
| Rhesus macaque | Macaca mulatta | 1 | 1 | |
| Bornean orangutan | Pongo pygmaeus | 2 | 0 | |
| Black howler | Alouatta caraya | 4 | 0 | |
| Chimpanzee | Pan troglodytes | 5 | 3 | |
| Patas monkey | Erythrocebus patas | 5 | 4 | |
| Mandrill | Mandrillus sphinx | 8 | 4 | |
| Javan lutung | Trachypithecus auratus | 5 | 5 | |
| Guereza | Colobus guereza kikuyuensis | 4 | 4 | |
| Buff-cheeked gibbon | Nomascus gabriellae | 1 | 1 | |
| White-cheeked gibbon | Nomascus leucogenys | 1 | 1 | |
| Emperor tamarin | Saguinus imperator subgrisescens | 3 | 0 | |
| Carnivora total | 20 | 0 | ||
| Canidae | ||||
| European grey wolf | Canis lupus | 2 | 0 | |
| Maned wolf | Chrysocyon brachyurus | 2 | 0 | |
| Fennec fox | Vulpes zerda | 1 | 0 | |
| Ursidae | ||||
| Brown bear | Ursus arctos | 1 | 0 | |
| Felidae | ||||
| African lion | Panthera leo bleyenberghi | 6 | 0 | |
| Amur tiger | Panthera tigris altaica | 2 | 0 | |
| Persian leopard | Panthera pardus saxicolor | 2 | 0 | |
| Serval | Leptailurus serval | 2 | 0 | |
| Procyonidae | ||||
| Brown-nosed coati | Nasua nasua | 2 | 0 | |
| Artiodactyla total | 77 | 25 | 32.46 (22.1–44.6) | |
| Suidae | ||||
| Wild boar | Sus scrofa | 10 | 8 | |
| Tayassuidae | ||||
| Collared peccary | Pecari tajacu | 10 | 9 | |
| Hippopotamidae | ||||
| Pigmy hippopotamus | Choeropsis liberiensis | 2 | 0 | |
| Hippopotamus | Hippopotamus amphibius | 1 | 0 | |
| Bovidae | 23 | 8 | 34.78 (17.8–56.7) | |
| European wisent | Bison bonasus bonasus | 5 | 0 | |
| Yak | Bos grunniens | 5 | 0 | |
| Mishmi takin | Budorcas taxicolor | 3 | 0 * | |
| Domestic goat | Capra hircus | 8 | 7 | |
| Polish heath sheep | Ovis aries polish_heath | 2 | 1 | |
| Camelidae total | 29 | 0 | ||
| Alpaca | Vicugna pacos | 8 | 0 | |
| Llama | Lama glama | 12 | 0 | |
| Dromedary | Camelus dromedarius | 5 | 0 | |
| Bactrian camel | Camelus bactrianus | 4 | 0 | |
| Perissodactyla | ||||
| South American tapir | Tapirus terrestris | 2 | 0 | |
| Metatheria total | 15 | 1 | 6.66 (0,4–30.2) | |
| Red-necked wallaby | Macropus rufogriseus | 10 | 0 | |
| Red kangaroo | Macropus rufus | 5 | 1 | |
| Leporidae European rabbit Rodentia |
Oryctolagus cuniculus | 3 | 0 | |
| Capybara | Hydrochoerus hydrochaeris | 6 | 0 | |
| Common gundi | Ctenodactylus gundi | 1 | 0 | |
| Aves total | 25 | 0 | ||
| Eurasian eagle owl | Bubo bubo | 1 | 0 | |
| Great hornet owl | Bubo virginianus | 1 | 0 | |
| Greater rhea | Rhea Americana | 5 | 0 * | |
| Violet turaco | Musophaga violacea | 1 | 0 | |
| Salmon-crested cockatoo | Cacatua moluccensis | 1 | 0 | |
| Military macaw | Ara militaris mexicana | 2 | 0 | |
| Yellow-crowned amazon | Amazona ochrocephala ochrocephala | 1 | 0 | |
| Greater flamingo | Phoenicopterus roseus | 5 | 0 | |
| Great curassow | Crax rubra rubra | 2 | 0 | |
| Southern ground hornbill | Bucorvus leadbeateri | 3 | 0 | |
| Andean condor | Vultur gryphus | 3 | 0 * | |
| Reptilia total | 12 | 5 | 41.66 (18.1–70.6) | |
| Nile crocodile | Crocodylus niloticus | 1 | 0 | |
| Reticulate Gila monster | Heloderma suspectum suspectum | 1 | 0 | |
| African rock python | Python sebae | 1 | 0 | |
| Cuban tree boa | Chilabothrus angulifer | 1 | 0 | |
| Boa constrictor | Boa constrictor | 1 | 0 | |
| Yellow anaconda | Eunectes notaeus | 1 | 0 | |
| Leopard tortoise | Stigmochelys pardalis | 1 | 1 | |
| Spur-thighed tortoise (Greek tortoise) |
Testudo graeca | 1 | 1 | |
| Giant Asian pond turtle | Heosemys grandis | 1 | 1 | |
| Radiated tortoise | Astrochelys radiata | 1 | 1 | |
| African spurred tortoise | Centrochelys sulcata | 1 | 1 | |
| Malaysian giant pond turtle | Orlitia borneensis | 1 | 0 | |
| Animals total | 201 | 54 | 26.86 (23.1–31.0) |
* excluded from phylogenetic analysis due to unresolved sequence data despite repeating PCR.