Table 3.

Total aligned similarity between intact and defective HIV proviral genomes sequenced with Illumina^® MiSeq™ and ONT.

Patient Identifier	Sample Identifier	Proviral Genome Status	Total Aligned Similarity Percentage (%)
340116	P4D1	Intact	99.3
339606	P3D8	Intact	98.6
	P3G7	Intact	99.4
	P3G8	Defective	99.6
333716	P2D4	Defective	99.1
339266	P2C7	Intact	99.6
	P1C7	Intact	99.6
	P1C8	Intact	99.7
	P5D4	Intact	99.6