Figure 2.

Comparing Bolt and CPTAC pipeline’s variant peptide IDs. (A) Venn diagram comparing the overall results between Bolt and CPTAC. (B) Spectrum Mill score distribution for the CPTAC’s peptide IDs that were also found by Bolt (blue), the peptide IDs that were matched to different spectra by Bolt (red) and the peptide IDs that were not reported by Bolt (green). (C) Distribution of q-values of the Bolt’s IDs that are unique as well as common with CPTAC, categorized into three categories: COSMIC, DbSNP and novel missense.