| AD | Alzheimer’s disease |
| MCL | Markov Clustering |
| MCODE | Molecular Complex Detection |
| Glay | Community Clustering |
| PPI | protein-protein interaction |
| PCC | Pearson Correlation Coefficient |
| TCMSP | Traditional Chinese Medicine Systems Pharmacology |
| NCBI | National Center for Biotechnology Information |
| OMIM | Online Mendelian Inheritance in Man |
| TTD | Therapeutic Target Database |
| IntAct | IntAct Molecular Interaction Database |
| GEO | Gene Expression Omnibus |
| KEGG | Kyoto Encyclopedia of Genes and Genomes |
| CORUM | Comprehensive Resource of Mammalian protein complexes |
| KXS | Kaixinsan (herb) |
| DGSYS | Dangguishaoyaosan (herb) |
| YGS | Yigansan (herb) |
| YQTYT | Yiqitongyutang (herb) |
| PGCAM | Panax Ginseng C. A. Mey. (compound of KXS and YQTYT) |
| AR | Acoritataninowii Rhizoma (compound of KXS) |
| PCW | Poria Cocos(Schw.) Wolf. (compound of KXS, DGSYS and YGS) |
| ASR | Angelicae Sinensis Radix (compound of DGSYS, YGS and YQTYT) |
| PRA | Paeoniae Radix Alba (compound of DGSYS) |
| CXR | Chuanxiong Rhizoma (compound of DGSYS, YGS and YQTYT) |
| AMK | Atractylodes Macrocephala Koidz. (compound of DGSYS and YGS) |
| AOJ | Alisma Orientale (Sam.) Juz. (compound of DGSYS) |
| RB | Radix Bupleuri (compound of YGS) |
| URC | Uncariae Ramulus Cumuncis (compound of YGS) |
| RS | Radix Salviae (compound of YQTYT) |
| CR | Codonopsis Radix (compound of YQTYT) |
| RPR | Radix Paeoniae Rubra (compound of YQTYT) |
| HMM | Hedysarum Multijugum Maxim. (compound of YQTYT) |
| ROC | Receiver Operating Characteristic |
| AUC | Area Under Curve |
| TPR | True Positive Rate |
| FPR | False Positive Rate |