Table 2.

List of top 20 most regulated DEGs by cold stress.

Locus ID	Gene ID	log2 Fold Change (T/S)	p_Value	Chr	Start	End	Annotation
XLOC_000983	Zm00001d027606	23.73473512	6.81 × 10−31	Chr1	8,915,719	8,918,057	transmembrane protein
XLOC_056725	-	−23.7343301	9.38 × 10−29	Chr7	170,162,017	170,164,579	-
XLOC_046285	Zm00001d017622	−2.670016539	9.74 × 10−25	Chr5	201,997,628	201,998,691	OSJNBa0088A01
XLOC_018249	-	24.01063195	1.05 × 10−24	Chr2	137,103,173	137,104,433	-
XLOC_058213	Zm00001d021006	−1.554984072	3.70 × 10−22	Chr7	140,181,294	140,183,018	MTD1
XLOC_034912	-	23.0239833	5.49 × 10−21	Chr4	176,582,912	176,584,805	-
XLOC_056365	Zm00001d021394	22.79156651	7.11 × 10−21	Chr7	150,891,109	150,895,395	hypothetical protein
XLOC_067464	-	20.05873411	6.49 × 10−20	Chr9	20,669,455	20,671,879	-
XLOC_049980	-	24.72008389	2.60 × 10−17	Chr6	114,599,197	114,601,220	-
XLOC_018351	-	24.4739764	5.35 × 10−17	Chr2	150,920,460	150,923,282	-
XLOC_055724	-	22.96632545	9.06 × 10−17	Chr7	95,897,276	95,897,694	-
XLOC_018159	Zm00001d004620	22.6740887	1.68 × 10−16	Chr2	122,442,335	122,447,585	uncharacterized protein
XLOC_004771	-	−23.94951263	2.29 × 10−16	Chr1	1,487,983	1,491,882	-
XLOC_007853	Zm00001d033411	−23.88106934	2.77 × 10−16	Chr1	262,279,726	262,300,105	hypothetical protein
XLOC_005508	Zm00001d028673	23.87942745	2.96 × 10−16	Chr1	42,581,898	42,586,482	small nuclear protein G
XLOC_036989	-	−23.84216727	3.11 × 10−16	Chr4	108,230,941	108,236,238	-
XLOC_014865	Zm00001d025968	23.6089741	6.37 × 10−16	Chr1	134,994,735	134,998,645	hypothetical protein
XLOC_018011	Zm00001d004338	23.58304546	6.85 × 10−16	Chr2	104,459,685	104,460,441	hypothetical protein
XLOC_046112	Zm00001d017287	−4.317481518	2.92 × 10−13	Chr5	191,750,113	191,750,625	uncharacterized protein
XLOC_027574	Zm00001d043525	−1.350259753	4.09 × 10−13	Chr3	202,741,852	202,743,157	oxidative stress 3

Comparison of DEGs between tolerant (T) and sensitive (S) inbred lines after cold stress. The p-value is less than 0.05.