Library of high-quality AI algorithm for drug discovery |
DeepChem |
Python |
https://github.com/deepchem/deepchem |
Molecular properties prediction |
Neural graph fingerprints |
CNN to generate molecular fingerprints |
https://github.com/HIPS/neural-fingerprint |
Conv_qsar_fast |
Tensor-based CNN |
https://github.com/connorcoley/conv_qsar_fast |
InnerOuterRNN |
Two kinds of RNN |
https://github.com/Chemoinformatics/InnerOuterRNN |
Molecular activity prediction |
DeepNeuralNet-QSAR |
Multitask DNN |
https://github.com/Merck/DeepNeuralNet-QSAR |
de novo molecule design with desired properties |
ORGANIC (Sanchez-Lengeling 2017) |
Generative model |
https://github.com/aspuru-guzik-group/ORGANIC |
REINVENT |
Generative model using RNN and reinforcement learning |
https://github.com/MarcusOlivecrona/REINVENT |
JunctionTree VAE (Jin et al. 2018) |
Generative model based on JunctionTree VAE |
https://github.com/wengong-jin/icml18-jtnn/tree/master/molvae |
Synthetic complexity of the molecule |
SCScore |
Score evaluation |
https://github.com/connorcoley/scscore |
Combining the RF with AutoDock scoring function |
DeltaVina |
Rescoring approach |
https://github.com/chengwang88/deltavina |