Skip to main content
. 2021 Oct 23;26(3):1893–1913. doi: 10.1007/s11030-021-10326-z

Table1.

Various ML/DL tools in the drug discovery process with respective descriptions

Description Tool Technique Websites
Library of high-quality AI algorithm for drug discovery DeepChem Python https://github.com/deepchem/deepchem
Molecular properties prediction Neural graph fingerprints CNN to generate molecular fingerprints https://github.com/HIPS/neural-fingerprint
Conv_qsar_fast Tensor-based CNN https://github.com/connorcoley/conv_qsar_fast
InnerOuterRNN Two kinds of RNN https://github.com/Chemoinformatics/InnerOuterRNN
Molecular activity prediction DeepNeuralNet-QSAR Multitask DNN https://github.com/Merck/DeepNeuralNet-QSAR
de novo molecule design with desired properties ORGANIC (Sanchez-Lengeling 2017) Generative model https://github.com/aspuru-guzik-group/ORGANIC
REINVENT Generative model using RNN and reinforcement learning https://github.com/MarcusOlivecrona/REINVENT
JunctionTree VAE (Jin et al. 2018) Generative model based on JunctionTree VAE https://github.com/wengong-jin/icml18-jtnn/tree/master/molvae
Synthetic complexity of the molecule SCScore Score evaluation https://github.com/connorcoley/scscore
Combining the RF with AutoDock scoring function DeltaVina Rescoring approach https://github.com/chengwang88/deltavina