Table 3.
Genotypic and allelic frequency of the polymorphisms in patient and control group.
| Allelic frequencies (N: 100) | Controls n:50 |
β-Thalassemia homozygous | Sickle cell anemia patients | *P value/Odds Ratio 95% CI | **P value/Odds Ratio 95% CI | |||
|---|---|---|---|---|---|---|---|---|
| TM n:50 |
TI n:50 |
HbF ≤ 17.4% n:50 |
HbF > 17.4% n:50 |
|||||
| − 158 (C → T) | C | 81 | 59 | 41 | 5 | 2 | 0.01/2.07 (1.1–3.6) | 0.29/2.4 (0.4–12.7) |
| T | 19 | 41 | 59 | 95 | 98 | |||
| + 25 (G → A) | G | 81 | 60 | 40 | 5 | 2 | 0.005/2.2 (1.27–3.96) | 0.29/2.4 (0.4–12.7) |
| A | 19 | 40 | 60 | 95 | 98 | |||
| rs11886868 (C → T) | C | 60 | 55 | 59 | 47 | 57 | 0.56/1.17 (0.67–2.06) | 0.11/1.56 (0.89–2.7) |
| T | 40 | 45 | 41 | 53 | 43 | |||
| rs7557939 (A → G) | A | 38 | 42 | 43 | 47 | 36 | 0.88/1.04 (0.5–1.8) | 0.11/1.57 (0.9–2.7) |
| G | 62 | 58 | 57 | 53 | 64 | |||
| rs4671393 (A → G) | A | 26 | 12 | 18 | 30 | 31 | 0.2/1.6 (0.73–3.5) | 0.95/1.01 (0.55–1.85) |
| G | 74 | 88 | 82 | 70 | 69 | |||
| rs1427407 (G → T) | G | 95 | 96 | 81 | 89 | 72 | 0.002/5.6 (1.84–17.2) | 0.003/3.14 (1.46–6.75) |
| T | 5 | 4 | 19 | 11 | 28 | |||
| rs7606173 (G → C) | G | 93 | 93 | 95 | 80 | 78 | 0.55/0.69 (0.21–2.28) | 0.72/1.1 (0.57–2.22) |
| C | 07 | 7 | 5 | 20 | 22 | |||
|
rs66650371 TAC → 3 base Deletion |
TAC | 85 | 86 | 75 | 94 | 79 | 0.06/2.0 (0.96–4.12) | 0.007/3.76 (1.4–9.8) |
| – | 15 | 14 | 25 | 6 | 21 | |||
| rs9399137 (T → C) | T | 85 | 86 | 75 | 94 | 79 | 0.06/2.0 (0.96–4.12) | 0.007/3.76 (1.4–9.8) |
| C | 15 | 14 | 25 | 6 | 21 | |||
n Number of patients in each group, N Total number of alleles in each group.
*Thalassemia patients.
**SCA patients.