Figure 3.

Recombination analyses of Australian FCV strains identified in this study. The top panel shows similarity comparisons of ACT2 against representative FCV strains across the entire genome using a sliding window (window size: 500 bp, step size: 10 bp). The potential recombination breakpoints are shown as red vertical lines. The bottom panel shows phylogenetic trees based on each non-recombinant region separated by recombination breakpoints. The strain names are labelled with different colours to mark the representative strains used in SimPlot analyses, including the parental groups for the recombinants.