Table 1.
Primer Name | Targeted Gene | Sequence (5′–3′) | Amplicon Size (bp) | Reference |
---|---|---|---|---|
EHR16SD * EHR16SR * fD1 |
16S rRNA | GGT ACC YAC AGA AGA AGT CC | 345 | [21] |
TAG CAC TCA TCG TTT ACA GC | [21] | |||
AGA GTT TGA TCC TGG CTC AG | ~1431 | [22,23] | ||
rP2 | ACG GCT ACC TTG TTA CGA CTT | [22,23] | ||
HS1a | groEL | AIT GGG CTG GTA ITG AAA T | ~1400 | [24,26] |
HS6a | CCI CCI GGI ACI AIA CCT TC | [24,26] | ||
HS43 | ATW GCW AAR GAA GCA TAG TC | 1297 | [25] | |
HSVR | CTC AAC AGC AGC TCT AGT AGC | [25] | ||
Dsb-330 | dsb | GAT GAT GTT TGA AGA TAT SAA ACA AAT | 401 | [27,28] |
Dsb-720 ** Dsb-380 |
CTA TTT TAC TTC TTA AAG TTG ATA WAT C | 349 | [27,28] | |
ATT TTT AGR GAT TTT CCA ATA CTT GG | [28] |
* Primers used in the initial PCR screening, ** primer used on first and second round.