Table 2.
Characteristics of samples analyzed by HTS.
| ID Patients | Sample | Sample Date | CT Value | Delay from First Sample (d) | Type of Investigation |
|---|---|---|---|---|---|
| 1a | NPS | 29.03.2020 | 22.2 | intra-host temporal variability | |
| 1b | NPA | 19.04.2020 | 26.22 | 21 | |
| 2a | NPS | 27.03.2020 | 17 | intra-host temporal variability | |
| 2b | NPS | 15.04.2020 | 17.7 | 19 | |
| 2c | NPS | 13.05.2020 | 31.7 | 47 | |
| 3a | NPS | 13.03.2020 | 12.6 | intra-host compartmental variability | |
| 3b | BAL | 26.03.2020 | 19.8 | 13 | |
| 4a | NPA | 01.04.2020 | 16.9 | intra-host compartmental variability | |
| 4b | BAL | 08.04.2020 | 23 | 7 | |
| 5a | NPS | 31.03.2020 | 17 | intra-host compartmental variability | |
| 5b | plasma | 19.04.2020 | 30.6 | 19 | |
| 5c | BAL | 22.04.2020 | 25 | 22 | |
| 5d | plasma | 27.04.2020 | 30.5 | 27 | |
| 5e | BAL | 03.05.2020 | 31 | 33 | |
| 6a | NPS | 02.04.2020 | 26.3 | intra-host temporal variability | |
| 6b | NPS | 12.04.2020 | 20.7 | 10 | |
| 6c | NPS | 24.04.2020 | 27 | 22 |
Each ID patient number represents one distinct patient, the letter associated with the number represent distinct samples from the same patient. NPS = nasopharyngeal swab, NPA = nasopharyngeal aspiration, CT = cycle threshold, BAL = bronchoalveolar lavage, d = days.