AIS	adenocarcinoma in situ
AUC	areas under the curve
CI	confidence intervals
CIN	cervical intraepithelial neoplasia
CIN1	cervical intraepithelial neoplasia grade 1
CIN	cervical intraepithelial neoplasia grade 2
CIN2+	cervical intraepithelial neoplasia grade 2, grade 3 and cancer
CIN3	cervical intraepithelial neoplasia grade 3
CIN3+	cervical intraepithelial neoplasia grade 3 and cancer
DNA	deoxyribonucleic acid
E1	early gene 1
E7	early gene 7
FDR	false discovery rate
FFPE	formalin fixed paraffin-embedded
HC2	Hybrid Capture 2
HPV	Human papillomavirus
HPV31	Human papillomavirus type 31
HR	high-risk
IARC	International Agency for Research on Cancer
ICC	invasive cervical cancer
KPNC	Kaiser Permanente Northern California
L1	late gene 1
MAF	minor allele frequency
MRCA	most recent common ancestor
NCI	National Cancer Institute
OR	odds ratio
PaP	Persistence and Progression
PCR	polymerase chain reaction
ROC	Receiver operating characteristic
SNPs	single nucleotide polymorphisms
STM	specimen transport medium
vs.	versus