Antibodies |
Anti-Histone H3 (tri methyl K9) antibody - ChIP Grade |
Abcam |
Cat#: ab8898 |
Anti-CBX1 / HP1 beta antibody |
Abcam |
Cat#: ab10478 |
Anti-KAP1 antibody |
Abcam |
Cat#: ab10483 |
Alexa Fluor® 647 Donkey Anti-Rabbit IgG (H+L) Antibody |
Life Technologies |
Cat#: A31573
|
Chemicals, Peptides, and Recombinant Proteins |
TransIT-LT1 Transfection Reagent |
Mirus |
Cat#: MIR 2306 |
Lentivirus Precipitation Solution |
Alstem |
Cat#: VC100 |
Polybrene |
EMD Millipore |
Cat#: TR-1003-G |
Abscisic acid |
Sigma |
Cat#: A1049 |
JF549-HaloTag ligand |
Grimm, et al 2015
|
N/A |
1,6 hexanediol |
Sigma |
Cat#: 240117 |
ProLong™ Live Antifade Reagent |
ThermoFisher |
Cat#: P36975
|
Electroporation enhancer |
IDT |
Cat#: 1075915 |
Hydroxyurea |
Sigma |
Cat#: H8627 |
Hoechst 33342 |
ThermoFisher |
Cat#: H3570 |
Dynabeads Protein A |
ThermoFisher |
Cat#: 10001D, Lot 00531421 |
Critical Commercial Assays |
Qubit dsDNA HS Assay Kit |
Invitrogen |
Cat #: Q32854
|
SYBR Green Max Mix |
BioRad |
Cat #: 172-5125 |
Deposited Data |
H3K9me3 ChIP-seq |
GEO |
GSE175500 |
Experimental Models: Cell Lines |
Human: U-2 OS cell line |
ATCC |
Cat#: HTB-96 |
Human: LentiX 293T |
Takara |
Cat#: 632180 |
Oligonucleotides |
sgRNAs for Cas9 |
See Table S2 for sequences and information. |
N/A |
Fluorescently labeled crRNAs for Cas9 |
See Table S3 for sequences and information. |
N/A |
RT-qPCR primers |
See Table S4 for sequences and information. |
N/A |
Recombinant DNA |
pHR: pmU6 sgRNA pCMV Puro |
This paper |
pSLQ1844 |
pHR: pTRE3G dCas9-2xNLS-HaloTag |
Wang et. al. 2018
|
pSLQ4218 |
pHR: pPGK ABI-tagBFP-dCas9-2xNLS |
Wang et. al. 2018
|
pSLQ4356 |
pHR: pPGK PYL1-sfGFP-HP1A |
Wang et. al. 2018
|
pSLQ6901 |
pHR: pPGK PYL1-sfGFP-HP1Adel72 |
This paper |
pSLQ6903 |
pHR: pPGK PYL1-sfGFP-HP1AI165E |
This paper |
pSLQ6904 |
pHR: pPGK mCherry-HP1A |
This paper |
pSLQ6909 |
pHR: pPGK PYL1-sfGFP-NLS |
This paper |
pSLQ6918 |
pHR: pmU6 sgRNA 2xMS2 pUbC MCP-mCherry-p2a-Puro |
This paper |
pSLQ6941 |
Software and Algorithms |
Fiji (ImageJ) |
Schindelin et al. 2012
|
https://fiji.sc/
|
TrackMate plugin |
Tinevez et. al. 2017
|
https://imagej.net/TrackMate
|
Correct 3D Drift plugin |
Parslow et. al. 2014
|
https://imagej.net/Correct_3D_Drift
|
Bleach correction macro |
J. Rietdorf, EMBL Heidelberg |
https://imagej.net/Bleach_Correction
|
NIS Elements Version 4.60 |
Nikon |
https://www.microscope.healthcare.nikon.com/products/software/nis-elements
|
Prism 8 |
GraphPad |
https://www.graphpad.com/
|
FlowJo |
FlowJo, LLC |
https://www.flowjo.com/
|
Bowtie2 |
Langmead et. al. 2012
|
http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
|
Samtools |
Whitman Institute |
http://www.htslib.org/
|
Interactive Genome Viewer |
Broad Institute |
https://software.broadinstitute.org/software/igv/
|
bigwiggeneration.txt |
Zenodo |
https://doi.org/10.5281/zenodo.5110819
|
Other |
QSonica Q500 |
QSonica |
https://www.sonicator.com/
|