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. 2020 Jan 30;5:14. [Version 1] doi: 10.12688/wellcomeopenres.15639.1

Figure 3. C. jejuni and C. coli reference 31-mer embedding.

Figure 3.

t-SNE embedding of the 31-mer distances between the reference isolates shows that the reference population conforms relatively well to the clonal complex grouping. The test cases, indicated by circles, are all correctly identified by mSWEEP and t-SNE also places them within or near the true source group.